CircRNA Information

General Information
circRNA Basic Information
CircID chr16:3727701|3727877
Strand +
CircType exon
Host Gene ENSG00000005339.11;
Algorism CIRI2;
Sequence CATGGCCAGCTCCATAGATCAGGGACACTTGGGGAACCCCGAACAGAGTGCAATGCTCCCCCAGCTGAACACCCCCAGCAGGAGTGCGCTGTCCAGCGAACTGTCCCTGGTCGGGGACACCACGGGGGACACGCTAGAGAAGTTTGTGGAGGGCTTGTAGCATTGTGAGAGCATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:3727701|3727877 hsa-miR-25-5p 0 0 1
chr16:3727701|3727877 hsa-miR-25-3p 0 0 1
chr16:3727701|3727877 hsa-miR-32-5p 0 0 1
chr16:3727701|3727877 hsa-miR-32-3p 0 0 1
chr16:3727701|3727877 hsa-miR-221-5p 0 0 1
chr16:3727701|3727877 hsa-miR-221-3p 0 0 1
chr16:3727701|3727877 hsa-miR-222-5p 0 0 1
chr16:3727701|3727877 hsa-miR-222-3p 0 0 1
chr16:3727701|3727877 hsa-miR-363-5p 0 0 1
chr16:3727701|3727877 hsa-miR-363-3p 0 0 1
chr16:3727701|3727877 hsa-miR-367-5p 0 0 1
chr16:3727701|3727877 hsa-miR-367-3p 0 0 1
chr16:3727701|3727877 hsa-miR-370-5p 0 0 1
chr16:3727701|3727877 hsa-miR-370-3p 0 0 1
chr16:3727701|3727877 hsa-miR-92b-5p 0 0 1
chr16:3727701|3727877 hsa-miR-92b-3p 0 0 1
chr16:3727701|3727877 hsa-miR-609 0 0 1
chr16:3727701|3727877 hsa-miR-625-5p 0 0 1
chr16:3727701|3727877 hsa-miR-625-3p 0 0 1
chr16:3727701|3727877 hsa-miR-637 0 1 1
chr16:3727701|3727877 hsa-miR-639 0 0 1
chr16:3727701|3727877 hsa-miR-939-5p 0 0 1
chr16:3727701|3727877 hsa-miR-939-3p 0 0 1
chr16:3727701|3727877 hsa-miR-942-5p 0 0 1
chr16:3727701|3727877 hsa-miR-942-3p 0 0 1
chr16:3727701|3727877 hsa-miR-1251-5p 0 0 1
chr16:3727701|3727877 hsa-miR-1251-3p 0 0 1
chr16:3727701|3727877 hsa-miR-1275 0 0 1
chr16:3727701|3727877 hsa-miR-1207-3p 0 0 1
chr16:3727701|3727877 hsa-miR-125a-5p 0 0 1
chr16:3727701|3727877 hsa-miR-483-3p 0 0 1
chr16:3727701|3727877 hsa-miR-342-3p 0 0 1
chr16:3727701|3727877 hsa-miR-125b 0 0 1
chr16:3727701|3727877 hsa-miR-768-3p 0 0 1
chr16:3727701|3727877 hsa-miR-92a 0 0 1
chr16:3727701|3727877 hsa-miR-608 1 0 0
chr16:3727701|3727877 hsa-miR-762 1 0 0
chr16:3727701|3727877 hsa-miR-1470 1 0 0
chr16:3727701|3727877 hsa-miR-3657 0 1 0
chr16:3727701|3727877 hsa-miR-5698 0 1 0
chr16:3727701|3727877 hsa-miR-5787 1 0 0
chr16:3727701|3727877 hsa-miR-7703 1 1 0
chr16:3727701|3727877 hsa-miR-12125 0 1 0
chr16:3727701|3727877 hsa-miR-211-3p 0 1 0
chr16:3727701|3727877 hsa-miR-4731-5p 0 1 0
chr16:3727701|3727877 hsa-miR-23b-5p 0 1 0
chr16:3727701|3727877 hsa-miR-4655-3p 0 1 0
chr16:3727701|3727877 hsa-miR-6732-5p 1 0 0
chr16:3727701|3727877 hsa-miR-6874-5p 0 1 0
chr16:3727701|3727877 hsa-miR-6774-3p 0 1 0
chr16:3727701|3727877 hsa-miR-2277-3p 0 1 0
chr16:3727701|3727877 hsa-miR-6753-5p 0 1 0
chr16:3727701|3727877 hsa-miR-4638-3p 0 1 0
chr16:3727701|3727877 hsa-miR-6513-3p 0 1 0
chr16:3727701|3727877 hsa-miR-7113-5p 0 1 0
chr16:3727701|3727877 hsa-miR-92a-3p 0 1 0
chr16:3727701|3727877 hsa-miR-670-5p 0 1 0
chr16:3727701|3727877 hsa-miR-1343-5p 1 0 0
chr16:3727701|3727877 hsa-miR-6726-5p 1 0 0
chr16:3727701|3727877 hsa-miR-6752-5p 1 1 0
chr16:3727701|3727877 hsa-miR-6803-5p 1 1 0
chr16:3727701|3727877 hsa-miR-7110-5p 1 0 0
chr16:3727701|3727877 hsa-miR-6751-5p 1 1 0
chr16:3727701|3727877 hsa-miR-328-5p 1 0 0
chr16:3727701|3727877 hsa-miR-3187-5p 0 1 0
chr16:3727701|3727877 hsa-miR-6799-3p 1 0 0
chr16:3727701|3727877 hsa-miR-4665-5p 0 1 0
chr16:3727701|3727877 hsa-miR-193b-3p 1 0 0
chr16:3727701|3727877 hsa-miR-375-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:3727701|3727877
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MASSIDQGHLGNPEQSAMLPQLNTPSRSALSSELSLVGDTTGDTLEKFVEGL
Nucleotide Sequence ATGGCCAGCTCCATAGATCAGGGACACTTGGGGAACCCCGAACAGAGTGCAATGCTCCCCCAGCTGAACACCCCCAGCAGGAGTGCGCTGTCCAGCGAACTGTCCCTGGTCGGGGACACCACGGGGGACACGCTAGAGAAGTTTGTGGAGGGCTTGTAG
CircID chr16:3727701|3727877
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MLSQCYKPSTNFSSVSPVVSPTRDSSLDSALLLGVFSWGSIALCSGFPKCP
Nucleotide Sequence ATGCTCTCACAATGCTACAAGCCCTCCACAAACTTCTCTAGCGTGTCCCCCGTGGTGTCCCCGACCAGGGACAGTTCGCTGGACAGCGCACTCCTGCTGGGGGTGTTCAGCTGGGGGAGCATTGCACTCTGTTCGGGGTTCCCCAAGTGTCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab