CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4425956|4426077
Strand +
CircType exon
Host Gene ENSG00000103423.12;
Algorism CIRI2;
Sequence CAGGTCTCAATGTCAGCAGCGCTCGGGGGCCGCAAGAGGTCAGGGAAGACGCAAAGGCGGGGACGCTCAGCTTGCGGCTCAGCCATGCCCCCACCACGCCCTCCCTGGGCGGCCGGGCCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4425956|4426077 hsa-miR-541-5p 0 0 1
chr16:4425956|4426077 hsa-miR-541-3p 0 0 1
chr16:4425956|4426077 hsa-miR-1321 0 0 1
chr16:4425956|4426077 hsa-miR-769-5p 0 0 1
chr16:4425956|4426077 hsa-miR-654-5p 0 0 1
chr16:4425956|4426077 hsa-miR-628-5p 0 0 1
chr16:4425956|4426077 hsa-miR-125a-5p 0 0 1
chr16:4425956|4426077 hsa-miR-1274a 0 0 1
chr16:4425956|4426077 hsa-miR-125b 0 0 1
chr16:4425956|4426077 hsa-miR-1268 0 0 1
chr16:4425956|4426077 hsa-miR-762 1 0 0
chr16:4425956|4426077 hsa-miR-1181 1 0 0
chr16:4425956|4426077 hsa-miR-663b 1 0 0
chr16:4425956|4426077 hsa-miR-1268a 1 1 0
chr16:4425956|4426077 hsa-miR-1913 1 0 0
chr16:4425956|4426077 hsa-miR-2861 1 0 0
chr16:4425956|4426077 hsa-miR-4270 0 1 0
chr16:4425956|4426077 hsa-miR-1268b 1 1 0
chr16:4425956|4426077 hsa-miR-4663 0 1 0
chr16:4425956|4426077 hsa-miR-4706 1 0 0
chr16:4425956|4426077 hsa-miR-4739 0 1 0
chr16:4425956|4426077 hsa-miR-3194-3p 1 0 0
chr16:4425956|4426077 hsa-miR-4665-3p 1 0 0
chr16:4425956|4426077 hsa-miR-6727-5p 1 0 0
chr16:4425956|4426077 hsa-miR-512-3p 1 0 0
chr16:4425956|4426077 hsa-miR-6829-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6732-5p 1 0 0
chr16:4425956|4426077 hsa-miR-615-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6763-3p 1 0 0
chr16:4425956|4426077 hsa-miR-6771-5p 1 0 0
chr16:4425956|4426077 hsa-miR-889-5p 0 1 0
chr16:4425956|4426077 hsa-miR-6821-3p 0 1 0
chr16:4425956|4426077 hsa-miR-149-3p 1 0 0
chr16:4425956|4426077 hsa-miR-3162-5p 1 0 0
chr16:4425956|4426077 hsa-miR-4732-3p 0 1 0
chr16:4425956|4426077 hsa-miR-339-3p 1 0 0
chr16:4425956|4426077 hsa-miR-4746-3p 1 0 0
chr16:4425956|4426077 hsa-miR-7113-5p 0 1 0
chr16:4425956|4426077 hsa-miR-670-5p 0 1 0
chr16:4425956|4426077 hsa-miR-6787-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6816-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6775-5p 1 1 0
chr16:4425956|4426077 hsa-miR-6754-5p 0 1 0
chr16:4425956|4426077 hsa-miR-6769a-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6803-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6862-5p 0 1 0
chr16:4425956|4426077 hsa-miR-1237-5p 1 0 0
chr16:4425956|4426077 hsa-miR-328-5p 1 0 0
chr16:4425956|4426077 hsa-miR-4685-5p 1 0 0
chr16:4425956|4426077 hsa-miR-4745-3p 0 1 0
chr16:4425956|4426077 hsa-miR-6729-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6777-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6848-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6883-5p 1 1 0
chr16:4425956|4426077 hsa-miR-6885-5p 1 0 0
chr16:4425956|4426077 hsa-miR-1199-5p 0 1 0
chr16:4425956|4426077 hsa-miR-4665-5p 1 0 0
chr16:4425956|4426077 hsa-miR-6785-5p 1 1 0
chr16:4425956|4426077 hsa-miR-6724-5p 1 0 0
chr16:4425956|4426077 hsa-miR-10401-3p 1 0 0
chr16:4425956|4426077 hsa-miR-10392-3p 1 0 0
chr16:4425956|4426077 hsa-miR-372-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:4425956|4426077
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MSAALGGRKRSGKTQRRGRSACGSAMPPPRPPWAAGP
Nucleotide Sequence ATGTCAGCAGCGCTCGGGGGCCGCAAGAGGTCAGGGAAGACGCAAAGGCGGGGACGCTCAGCTTGCGGCTCAGCCATGCCCCCACCACGCCCTCCCTGGGCGGCCGGGCCC
CircID chr16:4425956|4426077
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MAEPQAERPRLCVFPDLLRPPSAADIET
Nucleotide Sequence ATGGCTGAGCCGCAAGCTGAGCGTCCCCGCCTTTGCGTCTTCCCTGACCTCTTGCGGCCCCCGAGCGCTGCTGACATTGAGACC
CircID chr16:4425956|4426077
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MSRKLSVPAFASSLTSCGPRALLTLRP
Nucleotide Sequence CTGAGCCGCAAGCTGAGCGTCCCCGCCTTTGCGTCTTCCCTGACCTCTTGCGGCCCCCGAGCGCTGCTGACATTGAGACCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab