CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4455569|4455765
Strand +
CircType exon
Host Gene ENSG00000103423.12;
Algorism CIRI2;
Sequence TGCCACCAGCCTCTGGGGCTGCATCCTACTGCCCGGGCTGTCCACTGTGACCTTTCCGTGGAGAGAGGTGTTGTCCCATGATTTTGCTGTTGCCAAGGCCGTCCAGAGGCTCTGCGGGTGGGAGCTCAGTGCTGCTGTTCTGGAATCCTCCCGTCTCCCAGGTGCCCTGGCCCTTGGAGGGGCTGCTGCTTCCCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4455569|4455765 hsa-miR-15a-5p 0 0 1
chr16:4455569|4455765 hsa-miR-15a-3p 0 0 1
chr16:4455569|4455765 hsa-miR-27a-5p 0 0 1
chr16:4455569|4455765 hsa-miR-27a-3p 0 0 1
chr16:4455569|4455765 hsa-miR-182-5p 0 0 1
chr16:4455569|4455765 hsa-miR-182-3p 0 0 1
chr16:4455569|4455765 hsa-miR-15b-5p 0 0 1
chr16:4455569|4455765 hsa-miR-15b-3p 0 0 1
chr16:4455569|4455765 hsa-miR-27b-5p 0 0 1
chr16:4455569|4455765 hsa-miR-27b-3p 0 0 1
chr16:4455569|4455765 hsa-miR-184 0 0 1
chr16:4455569|4455765 hsa-miR-195-5p 0 0 1
chr16:4455569|4455765 hsa-miR-195-3p 0 0 1
chr16:4455569|4455765 hsa-miR-422a 0 0 1
chr16:4455569|4455765 hsa-miR-424-5p 0 0 1
chr16:4455569|4455765 hsa-miR-424-3p 0 0 1
chr16:4455569|4455765 hsa-miR-497-5p 0 0 1
chr16:4455569|4455765 hsa-miR-497-3p 0 0 1
chr16:4455569|4455765 hsa-miR-545-5p 0 0 1
chr16:4455569|4455765 hsa-miR-545-3p 0 0 1
chr16:4455569|4455765 hsa-miR-1265 0 0 1
chr16:4455569|4455765 hsa-miR-548p 0 0 1
chr16:4455569|4455765 hsa-miR-532-3p 0 1 1
chr16:4455569|4455765 hsa-miR-485-5p 0 0 1
chr16:4455569|4455765 hsa-miR-525-5p 0 0 1
chr16:4455569|4455765 hsa-miR-1224-3p 0 0 1
chr16:4455569|4455765 hsa-miR-483-5p 0 1 1
chr16:4455569|4455765 hsa-miR-520a-5p 0 0 1
chr16:4455569|4455765 hsa-miR-1302 0 1 1
chr16:4455569|4455765 hsa-miR-1260 0 0 1
chr16:4455569|4455765 hsa-miR-1280 0 0 1
chr16:4455569|4455765 hsa-miR-128 0 0 1
chr16:4455569|4455765 hsa-miR-16 0 0 1
chr16:4455569|4455765 hsa-miR-1308 0 0 1
chr16:4455569|4455765 hsa-miR-378 0 0 1
chr16:4455569|4455765 hsa-miR-138 0 0 1
chr16:4455569|4455765 hsa-miR-665 1 0 0
chr16:4455569|4455765 hsa-miR-1538 1 0 0
chr16:4455569|4455765 hsa-miR-3138 1 1 0
chr16:4455569|4455765 hsa-miR-4323 0 1 0
chr16:4455569|4455765 hsa-miR-4292 1 0 0
chr16:4455569|4455765 hsa-miR-4739 1 0 0
chr16:4455569|4455765 hsa-miR-5694 0 1 0
chr16:4455569|4455765 hsa-miR-6081 1 0 0
chr16:4455569|4455765 hsa-miR-9985 0 1 0
chr16:4455569|4455765 hsa-miR-12115 1 0 0
chr16:4455569|4455765 hsa-miR-12122 0 1 0
chr16:4455569|4455765 hsa-miR-128-3p 0 1 0
chr16:4455569|4455765 hsa-miR-671-5p 1 0 0
chr16:4455569|4455765 hsa-miR-6894-5p 0 1 0
chr16:4455569|4455765 hsa-miR-6728-5p 0 1 0
chr16:4455569|4455765 hsa-miR-7851-3p 0 1 0
chr16:4455569|4455765 hsa-miR-3192-5p 0 1 0
chr16:4455569|4455765 hsa-miR-6730-5p 0 1 0
chr16:4455569|4455765 hsa-miR-2467-5p 1 0 0
chr16:4455569|4455765 hsa-miR-23a-5p 1 0 0
chr16:4455569|4455765 hsa-miR-4640-5p 1 1 0
chr16:4455569|4455765 hsa-miR-194-5p 1 1 0
chr16:4455569|4455765 hsa-miR-7156-3p 0 1 0
chr16:4455569|4455765 hsa-miR-6828-5p 0 1 0
chr16:4455569|4455765 hsa-miR-7112-5p 0 1 0
chr16:4455569|4455765 hsa-miR-6895-5p 0 1 0
chr16:4455569|4455765 hsa-miR-4773 0 1 0
chr16:4455569|4455765 hsa-miR-216a-3p 0 1 0
chr16:4455569|4455765 hsa-miR-6857-3p 0 1 0
chr16:4455569|4455765 hsa-miR-5587-3p 0 1 0
chr16:4455569|4455765 hsa-miR-589-3p 0 1 0
chr16:4455569|4455765 hsa-miR-3156-3p 0 1 0
chr16:4455569|4455765 hsa-miR-6775-5p 1 1 0
chr16:4455569|4455765 hsa-miR-1343-5p 1 0 0
chr16:4455569|4455765 hsa-miR-6788-5p 0 1 0
chr16:4455569|4455765 hsa-miR-4728-5p 1 0 0
chr16:4455569|4455765 hsa-miR-5196-5p 1 0 0
chr16:4455569|4455765 hsa-miR-6836-5p 1 0 0
chr16:4455569|4455765 hsa-miR-4632-5p 1 0 0
chr16:4455569|4455765 hsa-miR-4685-5p 0 1 0
chr16:4455569|4455765 hsa-miR-4726-5p 1 1 0
chr16:4455569|4455765 hsa-miR-6729-5p 1 0 0
chr16:4455569|4455765 hsa-miR-3187-5p 1 0 0
chr16:4455569|4455765 hsa-miR-939-5p 1 0 0
chr16:4455569|4455765 hsa-miR-30c-1-3p 0 1 0
chr16:4455569|4455765 hsa-miR-6877-3p 1 1 0
chr16:4455569|4455765 hsa-miR-4646-5p 1 0 0
chr16:4455569|4455765 hsa-miR-6837-5p 0 1 0
chr16:4455569|4455765 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:4455569|4455765
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MRVGAQCCCSGILPSPRCPGPWRGCCFP
Nucleotide Sequence CTGCGGGTGGGAGCTCAGTGCTGCTGTTCTGGAATCCTCCCGTCTCCCAGGTGCCCTGGCCCTTGGAGGGGCTGCTGCTTCCCG
CircID chr16:4455569|4455765
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MPGLSTVTFPWREVLSHDFAVAKAVQRLCGWELSAAVLESSRLPGALALGGAAASR
Nucleotide Sequence CTGCCCGGGCTGTCCACTGTGACCTTTCCGTGGAGAGAGGTGTTGTCCCATGATTTTGCTGTTGCCAAGGCCGTCCAGAGGCTCTGCGGGTGGGAGCTCAGTGCTGCTGTTCTGGAATCCTCCCGTCTCCCAGGTGCCCTGGCCCTTGGAGGGGCTGCTGCTTCCCGG
CircID chr16:4455569|4455765
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MILLLPRPSRGSAGGSSVLLFWNPPVSQVPWPLEGLLLPG
Nucleotide Sequence ATGATTTTGCTGTTGCCAAGGCCGTCCAGAGGCTCTGCGGGTGGGAGCTCAGTGCTGCTGTTCTGGAATCCTCCCGTCTCCCAGGTGCCCTGGCCCTTGGAGGGGCTGCTGCTTCCCGGC
CircID chr16:4455569|4455765
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MDGLGNSKIMGQHLSPRKGHSGQPGQ
Nucleotide Sequence CTGGACGGCCTTGGCAACAGCAAAATCATGGGACAACACCTCTCTCCACGGAAAGGTCACAGTGGACAGCCCGGGCAGTAG
CircID chr16:4455569|4455765
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MSSHPQSLWTALATAKSWDNTSLHGKVTVDSPGSRMQPQRLVA
Nucleotide Sequence CTGAGCTCCCACCCGCAGAGCCTCTGGACGGCCTTGGCAACAGCAAAATCATGGGACAACACCTCTCTCCACGGAAAGGTCACAGTGGACAGCCCGGGCAGTAGGATGCAGCCCCAGAGGCTGGTGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab