CircRNA Information

General Information
circRNA Basic Information
CircID chr16:46903397|46903607
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCTGGGCTCAAGCAGTCTTCCTGTATCGGCCTCCCAAGTAGCTGGGACTACAGGCACACACCACCACACTCAGCCAACTTTTATATTTTTTGTAGACATAGGGTCTCACTGTTGTCCAGGCTACTCTTGAACTCCTGGGCTCAAGCAATCATCCTGCCTCAGCCTCCAGAGTAGTTGGGATTACAGGCATAAGCCACCACACCCAGCAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:46903397|46903607 hsa-miR-335-5p 0 0 1
chr16:46903397|46903607 hsa-miR-335-3p 0 0 1
chr16:46903397|46903607 hsa-miR-596 0 0 1
chr16:46903397|46903607 hsa-miR-606 0 0 1
chr16:46903397|46903607 hsa-miR-609 0 0 1
chr16:46903397|46903607 hsa-miR-647 0 0 1
chr16:46903397|46903607 hsa-miR-650 0 0 1
chr16:46903397|46903607 hsa-miR-890 0 0 1
chr16:46903397|46903607 hsa-miR-665 0 0 1
chr16:46903397|46903607 hsa-miR-934 0 0 1
chr16:46903397|46903607 hsa-miR-940 0 0 1
chr16:46903397|46903607 hsa-miR-548n 0 0 1
chr16:46903397|46903607 hsa-miR-1827 0 1 1
chr16:46903397|46903607 hsa-miR-1225-3p 0 0 1
chr16:46903397|46903607 hsa-miR-769-5p 0 0 1
chr16:46903397|46903607 hsa-miR-1283 0 0 1
chr16:46903397|46903607 hsa-miR-485-5p 0 1 1
chr16:46903397|46903607 hsa-miR-574-5p 1 1 1
chr16:46903397|46903607 hsa-miR-532-5p 0 0 1
chr16:46903397|46903607 hsa-miR-654-3p 0 0 1
chr16:46903397|46903607 hsa-miR-876-3p 0 0 1
chr16:46903397|46903607 hsa-miR-1233 0 0 1
chr16:46903397|46903607 hsa-miR-323-5p 0 0 1
chr16:46903397|46903607 hsa-miR-550 0 0 1
chr16:46903397|46903607 hsa-miR-7 0 0 1
chr16:46903397|46903607 hsa-miR-516b 0 0 1
chr16:46903397|46903607 hsa-miR-1254 0 0 1
chr16:46903397|46903607 hsa-miR-571 1 0 0
chr16:46903397|46903607 hsa-miR-595 0 1 0
chr16:46903397|46903607 hsa-miR-762 1 0 0
chr16:46903397|46903607 hsa-miR-1268a 1 0 0
chr16:46903397|46903607 hsa-miR-3618 0 1 0
chr16:46903397|46903607 hsa-miR-3650 0 1 0
chr16:46903397|46903607 hsa-miR-3911 1 0 0
chr16:46903397|46903607 hsa-miR-3929 0 1 0
chr16:46903397|46903607 hsa-miR-1268b 1 0 0
chr16:46903397|46903607 hsa-miR-4449 1 0 0
chr16:46903397|46903607 hsa-miR-3689c 0 1 0
chr16:46903397|46903607 hsa-miR-4481 1 0 0
chr16:46903397|46903607 hsa-miR-4656 1 1 0
chr16:46903397|46903607 hsa-miR-4658 1 1 0
chr16:46903397|46903607 hsa-miR-4739 1 0 0
chr16:46903397|46903607 hsa-miR-5787 1 0 0
chr16:46903397|46903607 hsa-miR-8077 0 1 0
chr16:46903397|46903607 hsa-miR-6840-3p 0 1 0
chr16:46903397|46903607 hsa-miR-6747-5p 1 0 0
chr16:46903397|46903607 hsa-miR-4433a-3p 0 1 0
chr16:46903397|46903607 hsa-miR-6765-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6861-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6799-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6089 1 1 0
chr16:46903397|46903607 hsa-miR-4653-3p 0 1 0
chr16:46903397|46903607 hsa-miR-3064-5p 1 0 0
chr16:46903397|46903607 hsa-miR-7160-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6741-5p 1 0 0
chr16:46903397|46903607 hsa-miR-8069 1 0 0
chr16:46903397|46903607 hsa-miR-5589-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6776-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6742-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6772-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6796-5p 1 0 0
chr16:46903397|46903607 hsa-miR-2467-3p 1 0 0
chr16:46903397|46903607 hsa-miR-30b-3p 0 1 0
chr16:46903397|46903607 hsa-miR-5008-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6514-3p 0 1 0
chr16:46903397|46903607 hsa-miR-6771-5p 1 0 0
chr16:46903397|46903607 hsa-miR-4638-3p 0 1 0
chr16:46903397|46903607 hsa-miR-3690 0 1 0
chr16:46903397|46903607 hsa-miR-149-3p 1 0 0
chr16:46903397|46903607 hsa-miR-4715-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6877-5p 1 0 0
chr16:46903397|46903607 hsa-miR-516b-5p 0 1 0
chr16:46903397|46903607 hsa-miR-887-5p 0 1 0
chr16:46903397|46903607 hsa-let-7e-5p 0 1 0
chr16:46903397|46903607 hsa-miR-518c-5p 0 1 0
chr16:46903397|46903607 hsa-miR-20b-3p 0 1 0
chr16:46903397|46903607 hsa-miR-1306-3p 1 0 0
chr16:46903397|46903607 hsa-miR-514a-5p 0 1 0
chr16:46903397|46903607 hsa-miR-4709-5p 0 1 0
chr16:46903397|46903607 hsa-miR-1207-5p 1 0 0
chr16:46903397|46903607 hsa-miR-1233-5p 1 0 0
chr16:46903397|46903607 hsa-miR-1273h-5p 1 1 0
chr16:46903397|46903607 hsa-miR-3689b-3p 0 1 0
chr16:46903397|46903607 hsa-miR-4763-3p 1 0 0
chr16:46903397|46903607 hsa-miR-6769b-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6778-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6743-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6754-5p 0 1 0
chr16:46903397|46903607 hsa-miR-6756-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6803-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6751-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6780a-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6808-5p 0 1 0
chr16:46903397|46903607 hsa-miR-328-5p 1 0 0
chr16:46903397|46903607 hsa-miR-3689a-3p 0 1 0
chr16:46903397|46903607 hsa-miR-4745-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6848-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6887-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6885-5p 1 0 0
chr16:46903397|46903607 hsa-miR-1910-3p 0 1 0
chr16:46903397|46903607 hsa-miR-1285-3p 1 1 0
chr16:46903397|46903607 hsa-miR-1271-3p 0 1 0
chr16:46903397|46903607 hsa-miR-6773-5p 0 1 0
chr16:46903397|46903607 hsa-miR-3116 0 1 0
chr16:46903397|46903607 hsa-miR-6790-5p 1 1 0
chr16:46903397|46903607 hsa-miR-6791-5p 1 0 0
chr16:46903397|46903607 hsa-miR-6884-5p 1 1 0
chr16:46903397|46903607 hsa-miR-128-2-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:46903397|46903607
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MGSSSLPVSASQVAGTTGTHHHTQPTFIFFVDIGSHCCPGYS
Nucleotide Sequence CTGGGCTCAAGCAGTCTTCCTGTATCGGCCTCCCAAGTAGCTGGGACTACAGGCACACACCACCACACTCAGCCAACTTTTATATTTTTTGTAGACATAGGGTCTCACTGTTGTCCAGGCTACTCTTGA
CircID chr16:46903397|46903607
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MGSSNHPASASRVVGITGISHHTQQ
Nucleotide Sequence CTGGGCTCAAGCAATCATCCTGCCTCAGCCTCCAGAGTAGTTGGGATTACAGGCATAAGCCACCACACCCAGCAA
CircID chr16:46903397|46903607
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MLEPRSSRVAWTTVRPYVYKKYKSWLSVVVCACSPSYLGGRYRKTA
Nucleotide Sequence TTGCTTGAGCCCAGGAGTTCAAGAGTAGCCTGGACAACAGTGAGACCCTATGTCTACAAAAAATATAAAAGTTGGCTGAGTGTGGTGGTGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCCGATACAGGAAGACTGCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab