CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4690556|4690715
Strand -
CircType exon
Host Gene ENSG00000102858.11;
Algorism CIRI2;
Sequence GTACACACACACAAATGCACGCCCACTTGCACATGCTCACGCACATGTTCACACATGCACACTCACGCTCACACATGCTGTCACGCATACACACACGCACATACTCCTGCACATGTTCCCATGCATGTGTGTGCACTCGGACCGAGCATCTCCCACGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4690556|4690715 hsa-miR-19a-5p 0 0 1
chr16:4690556|4690715 hsa-miR-19a-3p 0 0 1
chr16:4690556|4690715 hsa-miR-210-5p 0 0 1
chr16:4690556|4690715 hsa-miR-210-3p 0 0 1
chr16:4690556|4690715 hsa-miR-517-5p 0 0 1
chr16:4690556|4690715 hsa-miR-517b-3p 0 0 1
chr16:4690556|4690715 hsa-miR-585-5p 0 0 1
chr16:4690556|4690715 hsa-miR-585-3p 0 0 1
chr16:4690556|4690715 hsa-miR-599 0 0 1
chr16:4690556|4690715 hsa-miR-648 0 0 1
chr16:4690556|4690715 hsa-miR-1286 0 0 1
chr16:4690556|4690715 hsa-miR-1292-5p 0 0 1
chr16:4690556|4690715 hsa-miR-1292-3p 0 0 1
chr16:4690556|4690715 hsa-miR-423-3p 0 1 1
chr16:4690556|4690715 hsa-miR-574-5p 1 1 1
chr16:4690556|4690715 hsa-miR-455-5p 0 0 1
chr16:4690556|4690715 hsa-miR-542-3p 0 0 1
chr16:4690556|4690715 hsa-miR-1268 0 0 1
chr16:4690556|4690715 hsa-miR-19b 0 0 1
chr16:4690556|4690715 hsa-miR-147 0 0 1
chr16:4690556|4690715 hsa-miR-297 1 1 0
chr16:4690556|4690715 hsa-miR-1268a 1 0 0
chr16:4690556|4690715 hsa-miR-4322 1 0 0
chr16:4690556|4690715 hsa-miR-4253 1 0 0
chr16:4690556|4690715 hsa-miR-3665 1 0 0
chr16:4690556|4690715 hsa-miR-1268b 1 0 0
chr16:4690556|4690715 hsa-miR-4658 0 1 0
chr16:4690556|4690715 hsa-miR-5698 1 0 0
chr16:4690556|4690715 hsa-miR-8073 1 0 0
chr16:4690556|4690715 hsa-miR-10226 0 1 0
chr16:4690556|4690715 hsa-miR-4433a-3p 1 1 0
chr16:4690556|4690715 hsa-miR-6867-5p 0 1 0
chr16:4690556|4690715 hsa-miR-4722-5p 1 1 0
chr16:4690556|4690715 hsa-miR-6759-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6805-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6821-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6810-5p 1 0 0
chr16:4690556|4690715 hsa-miR-1226-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6853-5p 1 1 0
chr16:4690556|4690715 hsa-miR-1228-5p 1 0 0
chr16:4690556|4690715 hsa-miR-654-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6818-5p 0 1 0
chr16:4690556|4690715 hsa-miR-3177-5p 0 1 0
chr16:4690556|4690715 hsa-miR-4763-3p 1 0 0
chr16:4690556|4690715 hsa-miR-6752-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6803-5p 1 0 0
chr16:4690556|4690715 hsa-miR-10401-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6722-3p 1 0 0
chr16:4690556|4690715 hsa-miR-6751-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6779-5p 1 1 0
chr16:4690556|4690715 hsa-miR-6788-5p 0 1 0
chr16:4690556|4690715 hsa-miR-1909-3p 1 0 0
chr16:4690556|4690715 hsa-miR-1238-5p 1 0 0
chr16:4690556|4690715 hsa-miR-4758-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6511b-5p 1 0 0
chr16:4690556|4690715 hsa-miR-30c-1-3p 0 1 0
chr16:4690556|4690715 hsa-miR-6750-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6790-5p 1 1 0
chr16:4690556|4690715 hsa-miR-6762-5p 1 0 0
chr16:4690556|4690715 hsa-miR-6811-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:4690556|4690715
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MHTHAHTCCHAYTHAHTPAHVPMHVCALGPSISHA
Nucleotide Sequence ATGCACACTCACGCTCACACATGCTGTCACGCATACACACACGCACATACTCCTGCACATGTTCCCATGCATGTGTGTGCACTCGGACCGAGCATCTCCCACGCA
CircID chr16:4690556|4690715
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MHAHLHMLTHMFTHAHSRSHMLSRIHTRTYSCTCSHACVCTRTEHLPR
Nucleotide Sequence ATGCACGCCCACTTGCACATGCTCACGCACATGTTCACACATGCACACTCACGCTCACACATGCTGTCACGCATACACACACGCACATACTCCTGCACATGTTCCCATGCATGTGTGTGCACTCGGACCGAGCATCTCCCACGC
CircID chr16:4690556|4690715
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MRDSMCERECACVNMCVSMCKWACICVCV
Nucleotide Sequence ATGCGTGACAGCATGTGTGAGCGTGAGTGTGCATGTGTGAACATGTGCGTGAGCATGTGCAAGTGGGCGTGCATTTGTGTGTGTGTA
CircID chr16:4690556|4690715
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MHGNMCRSMCVCVCVTACVSVSVHV
Nucleotide Sequence ATGCATGGGAACATGTGCAGGAGTATGTGCGTGTGTGTATGCGTGACAGCATGTGTGAGCGTGAGTGTGCATGTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab