CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4695511|4695636
Strand +
CircType exon
Host Gene ENSG00000168101.13;
Algorism CIRI2;
Sequence CCCAAGCTGGCTCTCCCCCAGGCCCTGAACTGGCTCAGGAAGGAGGCAGGAATGAGCTGACCGAGACAAGGCATCCTCCACCCACACATCCCATCTTCTGAGTGGTCCCAGAGCTGTGCGCCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4695511|4695636 hsa-miR-326 0 0 1
chr16:4695511|4695636 hsa-miR-575 0 0 1
chr16:4695511|4695636 hsa-miR-625-5p 0 0 1
chr16:4695511|4695636 hsa-miR-625-3p 0 0 1
chr16:4695511|4695636 hsa-miR-637 0 0 1
chr16:4695511|4695636 hsa-miR-661 1 0 1
chr16:4695511|4695636 hsa-miR-765 0 0 1
chr16:4695511|4695636 hsa-miR-1200 1 1 1
chr16:4695511|4695636 hsa-miR-1293 0 0 1
chr16:4695511|4695636 hsa-miR-1275 0 1 1
chr16:4695511|4695636 hsa-miR-532-5p 0 0 1
chr16:4695511|4695636 hsa-miR-330-5p 0 0 1
chr16:4695511|4695636 hsa-miR-644 0 0 1
chr16:4695511|4695636 hsa-miR-147 0 0 1
chr16:4695511|4695636 hsa-miR-762 1 0 0
chr16:4695511|4695636 hsa-miR-760 1 0 0
chr16:4695511|4695636 hsa-miR-1182 1 0 0
chr16:4695511|4695636 hsa-miR-2861 1 1 0
chr16:4695511|4695636 hsa-miR-4298 1 0 0
chr16:4695511|4695636 hsa-miR-4312 1 0 0
chr16:4695511|4695636 hsa-miR-4292 1 0 0
chr16:4695511|4695636 hsa-miR-3911 1 0 0
chr16:4695511|4695636 hsa-miR-3936 1 0 0
chr16:4695511|4695636 hsa-miR-1268b 1 0 0
chr16:4695511|4695636 hsa-miR-2392 1 0 0
chr16:4695511|4695636 hsa-miR-4647 0 1 0
chr16:4695511|4695636 hsa-miR-4651 1 0 0
chr16:4695511|4695636 hsa-miR-5698 0 1 0
chr16:4695511|4695636 hsa-miR-5705 1 1 0
chr16:4695511|4695636 hsa-miR-6085 1 0 0
chr16:4695511|4695636 hsa-miR-6745 1 1 0
chr16:4695511|4695636 hsa-miR-8089 1 0 0
chr16:4695511|4695636 hsa-miR-12114 1 0 0
chr16:4695511|4695636 hsa-miR-12119 1 0 0
chr16:4695511|4695636 hsa-miR-6747-3p 0 1 0
chr16:4695511|4695636 hsa-miR-7106-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6894-5p 1 1 0
chr16:4695511|4695636 hsa-miR-6728-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6807-5p 0 1 0
chr16:4695511|4695636 hsa-miR-6880-5p 1 1 0
chr16:4695511|4695636 hsa-miR-6727-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6759-5p 1 1 0
chr16:4695511|4695636 hsa-miR-1915-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6871-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6748-5p 1 1 0
chr16:4695511|4695636 hsa-miR-7109-5p 1 0 0
chr16:4695511|4695636 hsa-miR-4640-5p 1 0 0
chr16:4695511|4695636 hsa-miR-5001-3p 0 1 0
chr16:4695511|4695636 hsa-miR-3127-5p 0 1 0
chr16:4695511|4695636 hsa-miR-6749-5p 1 0 0
chr16:4695511|4695636 hsa-miR-937-5p 1 0 0
chr16:4695511|4695636 hsa-miR-3074-5p 1 1 0
chr16:4695511|4695636 hsa-miR-6758-3p 0 1 0
chr16:4695511|4695636 hsa-miR-5088-3p 1 0 0
chr16:4695511|4695636 hsa-miR-3177-3p 1 1 0
chr16:4695511|4695636 hsa-miR-6769b-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6812-5p 1 1 0
chr16:4695511|4695636 hsa-miR-6775-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6752-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6803-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6819-5p 1 0 0
chr16:4695511|4695636 hsa-miR-7107-5p 1 1 0
chr16:4695511|4695636 hsa-miR-7110-5p 1 0 0
chr16:4695511|4695636 hsa-miR-11181-3p 1 0 0
chr16:4695511|4695636 hsa-miR-6751-5p 1 0 0
chr16:4695511|4695636 hsa-miR-4685-5p 0 1 0
chr16:4695511|4695636 hsa-miR-4701-3p 1 0 0
chr16:4695511|4695636 hsa-miR-4726-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6846-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6848-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6731-5p 0 1 0
chr16:4695511|4695636 hsa-miR-1199-5p 0 1 0
chr16:4695511|4695636 hsa-miR-4665-5p 0 1 0
chr16:4695511|4695636 hsa-miR-6855-5p 1 0 0
chr16:4695511|4695636 hsa-miR-4472 1 0 0
chr16:4695511|4695636 hsa-miR-6724-5p 1 0 0
chr16:4695511|4695636 hsa-miR-6791-5p 1 0 0
chr16:4695511|4695636 hsa-miR-7107-3p 1 0 0
chr16:4695511|4695636 hsa-miR-6762-5p 1 0 0
chr16:4695511|4695636 hsa-miR-769-3p 1 0 0
chr16:4695511|4695636 hsa-miR-6829-3p 0 1 0
chr16:4695511|4695636 hsa-miR-7162-5p 0 1 0
chr16:4695511|4695636 hsa-miR-148b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:4695511|4695636
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MGPLRRWDVWVEDALSRSAHSCLLPEPVQGLGESQLG
Nucleotide Sequence CTGGGACCACTCAGAAGATGGGATGTGTGGGTGGAGGATGCCTTGTCTCGGTCAGCTCATTCCTGCCTCCTTCCTGAGCCAGTTCAGGGCCTGGGGGAGAGCCAGCTTGGG
CircID chr16:4695511|4695636
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MCGWRMPCLGQLIPASFLSQFRAWGRASL
Nucleotide Sequence ATGTGTGGGTGGAGGATGCCTTGTCTCGGTCAGCTCATTCCTGCCTCCTTCCTGAGCCAGTTCAGGGCCTGGGGGAGAGCCAGCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab