CircRNA Information

General Information
circRNA Basic Information
CircID chr16:47341|47557
Strand -
CircType exon
Host Gene ENSG00000161980.5;
Algorism CIRI2;
Sequence CCTCAGGACACACAACTCATACTGCCAGCTAAGCATCTACCCCGAGGGACAAGGCAAGCACACACTAGGGCAGCTGGGCCATCCTGGCCCTAATCCCTCCAGCGGTGTCCACACTGAGCATTGCAGCACTTGTAGAAGGTGGTCATCGGCTCATCTGCAGAGCGGGTCTGAAGCTGCATGAAGTAAGCACGAGGATGTTCGCATTTGGGACACGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:47341|47557 hsa-miR-22-5p 0 0 1
chr16:47341|47557 hsa-miR-22-3p 0 0 1
chr16:47341|47557 hsa-miR-34a-5p 0 0 1
chr16:47341|47557 hsa-miR-34a-3p 0 0 1
chr16:47341|47557 hsa-miR-187-5p 0 0 1
chr16:47341|47557 hsa-miR-187-3p 0 0 1
chr16:47341|47557 hsa-miR-302a-5p 0 0 1
chr16:47341|47557 hsa-miR-302a-3p 0 0 1
chr16:47341|47557 hsa-miR-302b-5p 0 0 1
chr16:47341|47557 hsa-miR-302b-3p 0 0 1
chr16:47341|47557 hsa-miR-302c-5p 0 0 1
chr16:47341|47557 hsa-miR-302c-3p 0 0 1
chr16:47341|47557 hsa-miR-302d-5p 0 0 1
chr16:47341|47557 hsa-miR-302d-3p 0 0 1
chr16:47341|47557 hsa-miR-372-5p 0 0 1
chr16:47341|47557 hsa-miR-372-3p 0 0 1
chr16:47341|47557 hsa-miR-373-5p 0 0 1
chr16:47341|47557 hsa-miR-373-3p 0 0 1
chr16:47341|47557 hsa-miR-449a 0 0 1
chr16:47341|47557 hsa-miR-520e-5p 0 0 1
chr16:47341|47557 hsa-miR-520e-3p 0 0 1
chr16:47341|47557 hsa-miR-520b-5p 0 0 1
chr16:47341|47557 hsa-miR-520b-3p 0 0 1
chr16:47341|47557 hsa-miR-571 0 0 1
chr16:47341|47557 hsa-miR-636 1 0 1
chr16:47341|47557 hsa-miR-648 0 0 1
chr16:47341|47557 hsa-miR-449b-5p 0 0 1
chr16:47341|47557 hsa-miR-449b-3p 0 0 1
chr16:47341|47557 hsa-miR-1296-5p 0 0 1
chr16:47341|47557 hsa-miR-1296-3p 0 0 1
chr16:47341|47557 hsa-miR-1301-5p 0 0 1
chr16:47341|47557 hsa-miR-1301-3p 0 0 1
chr16:47341|47557 hsa-miR-1200 0 0 1
chr16:47341|47557 hsa-miR-1205 0 0 1
chr16:47341|47557 hsa-miR-302e 0 0 1
chr16:47341|47557 hsa-miR-512-3p 0 0 1
chr16:47341|47557 hsa-miR-1283 0 0 1
chr16:47341|47557 hsa-miR-1184 0 0 1
chr16:47341|47557 hsa-miR-520d-3p 0 0 1
chr16:47341|47557 hsa-miR-34c-5p 0 0 1
chr16:47341|47557 hsa-miR-520a-3p 0 0 1
chr16:47341|47557 hsa-miR-520c-3p 0 0 1
chr16:47341|47557 hsa-miR-105 0 0 1
chr16:47341|47557 hsa-miR-218 0 0 1
chr16:47341|47557 hsa-miR-147 0 0 1
chr16:47341|47557 hsa-miR-219-1-3p 0 0 1
chr16:47341|47557 hsa-miR-663b 1 0 0
chr16:47341|47557 hsa-miR-1538 1 0 0
chr16:47341|47557 hsa-miR-3911 1 0 0
chr16:47341|47557 hsa-miR-4498 1 0 0
chr16:47341|47557 hsa-miR-4651 1 0 0
chr16:47341|47557 hsa-miR-4692 1 0 0
chr16:47341|47557 hsa-miR-6069 1 0 0
chr16:47341|47557 hsa-miR-18a-3p 1 0 0
chr16:47341|47557 hsa-miR-4731-5p 1 0 0
chr16:47341|47557 hsa-miR-6857-5p 1 0 0
chr16:47341|47557 hsa-miR-27a-5p 1 0 0
chr16:47341|47557 hsa-miR-6757-5p 1 0 0
chr16:47341|47557 hsa-miR-6727-5p 1 0 0
chr16:47341|47557 hsa-miR-197-5p 1 0 0
chr16:47341|47557 hsa-miR-1915-5p 1 0 0
chr16:47341|47557 hsa-miR-6835-5p 1 0 0
chr16:47341|47557 hsa-miR-1249-5p 1 0 0
chr16:47341|47557 hsa-miR-6795-5p 1 0 0
chr16:47341|47557 hsa-miR-6791-5p 1 0 0
chr16:47341|47557 hsa-miR-9851-5p 1 0 0
chr16:47341|47557 hsa-miR-10394-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:47341|47557
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MGHPGPNPSSGVHTEHCSTCRRWSSAHLQSGSEAA
Nucleotide Sequence CTGGGCCATCCTGGCCCTAATCCCTCCAGCGGTGTCCACACTGAGCATTGCAGCACTTGTAGAAGGTGGTCATCGGCTCATCTGCAGAGCGGGTCTGAAGCTGCATGA
CircID chr16:47341|47557
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MALIPPAVSTLSIAALVEGGHRLICRAGLKLHEVSTRMFAFGTR
Nucleotide Sequence CTGGCCCTAATCCCTCCAGCGGTGTCCACACTGAGCATTGCAGCACTTGTAGAAGGTGGTCATCGGCTCATCTGCAGAGCGGGTCTGAAGCTGCATGAAGTAAGCACGAGGATGTTCGCATTTGGGACACGA
CircID chr16:47341|47557
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MQCSVWTPLEGLGPGWPSCPSVCLPCPSG
Nucleotide Sequence CTGCAATGCTCAGTGTGGACACCGCTGGAGGGATTAGGGCCAGGATGGCCCAGCTGCCCTAGTGTGTGCTTGCCTTGTCCCTCGGGGTAG
CircID chr16:47341|47557
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MQLQTRSADEPMTTFYKCCNAQCGHRWRD
Nucleotide Sequence ATGCAGCTTCAGACCCGCTCTGCAGATGAGCCGATGACCACCTTCTACAAGTGCTGCAATGCTCAGTGTGGACACCGCTGGAGGGATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab