CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4743576|4743713
Strand +
CircType exon
Host Gene ENSG00000166246.12;
Algorism CIRI2;
Sequence CTGCCCTGGCTCCTCTGCCTCAGACCTGCCTCCCCTCGCCTTTGTGGCCCGAGTGGATAGGGAGGGGTTGGAGAACTTTCATTTTATTTGCAGGACTTCCCAGAGCAAAGCCATGAGTGTAGTGACAGTGGTGACATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4743576|4743713 hsa-miR-197-5p 0 0 1
chr16:4743576|4743713 hsa-miR-197-3p 0 0 1
chr16:4743576|4743713 hsa-miR-326 0 0 1
chr16:4743576|4743713 hsa-miR-135b-5p 0 0 1
chr16:4743576|4743713 hsa-miR-135b-3p 0 0 1
chr16:4743576|4743713 hsa-miR-650 0 1 1
chr16:4743576|4743713 hsa-miR-668-5p 0 0 1
chr16:4743576|4743713 hsa-miR-668-3p 0 0 1
chr16:4743576|4743713 hsa-miR-940 0 0 1
chr16:4743576|4743713 hsa-miR-1827 0 0 1
chr16:4743576|4743713 hsa-miR-330-5p 0 0 1
chr16:4743576|4743713 hsa-miR-515-5p 0 0 1
chr16:4743576|4743713 hsa-miR-220b 0 0 1
chr16:4743576|4743713 hsa-miR-135a 0 0 1
chr16:4743576|4743713 hsa-miR-762 1 0 0
chr16:4743576|4743713 hsa-miR-760 1 0 0
chr16:4743576|4743713 hsa-miR-3612 0 1 0
chr16:4743576|4743713 hsa-miR-3646 0 1 0
chr16:4743576|4743713 hsa-miR-4688 1 0 0
chr16:4743576|4743713 hsa-miR-5090 1 0 0
chr16:4743576|4743713 hsa-miR-11399 1 1 0
chr16:4743576|4743713 hsa-miR-6734-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6765-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6825-5p 1 1 0
chr16:4743576|4743713 hsa-miR-6089 1 0 0
chr16:4743576|4743713 hsa-miR-3192-5p 1 0 0
chr16:4743576|4743713 hsa-miR-4695-5p 1 0 0
chr16:4743576|4743713 hsa-miR-505-5p 0 1 0
chr16:4743576|4743713 hsa-miR-148a-5p 0 1 0
chr16:4743576|4743713 hsa-miR-3151-5p 1 0 0
chr16:4743576|4743713 hsa-miR-2467-3p 0 1 0
chr16:4743576|4743713 hsa-miR-204-3p 0 1 0
chr16:4743576|4743713 hsa-miR-3127-5p 1 0 0
chr16:4743576|4743713 hsa-miR-3667-3p 0 1 0
chr16:4743576|4743713 hsa-miR-877-5p 0 1 0
chr16:4743576|4743713 hsa-miR-6749-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6847-5p 0 1 0
chr16:4743576|4743713 hsa-miR-6736-3p 0 1 0
chr16:4743576|4743713 hsa-miR-6824-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6887-3p 0 1 0
chr16:4743576|4743713 hsa-miR-6773-3p 0 1 0
chr16:4743576|4743713 hsa-miR-6883-3p 0 1 0
chr16:4743576|4743713 hsa-miR-3184-3p 1 0 0
chr16:4743576|4743713 hsa-miR-6509-3p 0 1 0
chr16:4743576|4743713 hsa-miR-1207-5p 1 0 0
chr16:4743576|4743713 hsa-miR-4763-3p 1 0 0
chr16:4743576|4743713 hsa-miR-6778-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6893-5p 1 1 0
chr16:4743576|4743713 hsa-miR-6743-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6808-5p 1 1 0
chr16:4743576|4743713 hsa-miR-7111-5p 0 1 0
chr16:4743576|4743713 hsa-miR-4728-5p 1 0 0
chr16:4743576|4743713 hsa-miR-10396b-5p 1 0 0
chr16:4743576|4743713 hsa-miR-328-5p 1 0 0
chr16:4743576|4743713 hsa-miR-4649-5p 1 1 0
chr16:4743576|4743713 hsa-miR-6738-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6777-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6846-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6858-5p 1 0 0
chr16:4743576|4743713 hsa-miR-939-5p 1 0 0
chr16:4743576|4743713 hsa-miR-6511a-5p 0 1 0
chr16:4743576|4743713 hsa-miR-6805-3p 1 0 0
chr16:4743576|4743713 hsa-miR-6771-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:4743576|4743713
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MPPLAFVARVDREGLENFHFICRTSQSKAMSVVTVVT
Nucleotide Sequence CTGCCTCCCCTCGCCTTTGTGGCCCGAGTGGATAGGGAGGGGTTGGAGAACTTTCATTTTATTTGCAGGACTTCCCAGAGCAAAGCCATGAGTGTAGTGACAGTGGTGACA
CircID chr16:4743576|4743713
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MAPLPQTCLPSPLWPEWIGRGWRTFILFAGLPRAKP
Nucleotide Sequence CTGGCTCCTCTGCCTCAGACCTGCCTCCCCTCGCCTTTGTGGCCCGAGTGGATAGGGAGGGGTTGGAGAACTTTCATTTTATTTGCAGGACTTCCCAGAGCAAAGCCATGA
CircID chr16:4743576|4743713
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGSPANKMKVLQPLPIHSGHKGEGRQV
Nucleotide Sequence CTGGGAAGTCCTGCAAATAAAATGAAAGTTCTCCAACCCCTCCCTATCCACTCGGGCCACAAAGGCGAGGGGAGGCAGGTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab