CircRNA Information

General Information
circRNA Basic Information
CircID chr16:48539817|48539996
Strand +
CircType exon
Host Gene ENSG00000102921.6;
Algorism CIRI2;
Sequence CTCCCACTCTCCACTTCCCAGTTTGCAAATGTGGCTTTCGCCCACCAAGTGAAAGCGGACTGAGAGCAGCCCTTGGGGACGGCCCGGTGCCTGGCTGCAAGGCCGCGCTGGGGCTCTGTCTTGGTGCACATGGCTTGACCGGACTTTCCCTGCTTCCCACCACTTCCCTCACTCCCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:48539817|48539996 hsa-miR-185-5p 0 0 1
chr16:48539817|48539996 hsa-miR-185-3p 0 0 1
chr16:48539817|48539996 hsa-miR-527 0 0 1
chr16:48539817|48539996 hsa-miR-1301-5p 0 0 1
chr16:48539817|48539996 hsa-miR-1301-3p 0 0 1
chr16:48539817|48539996 hsa-miR-541-5p 0 0 1
chr16:48539817|48539996 hsa-miR-541-3p 0 0 1
chr16:48539817|48539996 hsa-miR-1225-3p 0 0 1
chr16:48539817|48539996 hsa-miR-767-5p 0 0 1
chr16:48539817|48539996 hsa-miR-654-5p 1 0 1
chr16:48539817|48539996 hsa-miR-455-3p 0 0 1
chr16:48539817|48539996 hsa-miR-518a-5p 0 0 1
chr16:48539817|48539996 hsa-miR-450b-5p 0 0 1
chr16:48539817|48539996 hsa-miR-920 1 0 0
chr16:48539817|48539996 hsa-miR-921 1 0 0
chr16:48539817|48539996 hsa-miR-1202 1 0 0
chr16:48539817|48539996 hsa-miR-1275 1 0 0
chr16:48539817|48539996 hsa-miR-4316 1 0 0
chr16:48539817|48539996 hsa-miR-4314 1 0 0
chr16:48539817|48539996 hsa-miR-4270 1 0 0
chr16:48539817|48539996 hsa-miR-4271 1 0 0
chr16:48539817|48539996 hsa-miR-1268b 1 0 0
chr16:48539817|48539996 hsa-miR-4466 1 0 0
chr16:48539817|48539996 hsa-miR-3689c 1 0 0
chr16:48539817|48539996 hsa-miR-4481 1 0 0
chr16:48539817|48539996 hsa-miR-4510 1 0 0
chr16:48539817|48539996 hsa-miR-4651 1 0 0
chr16:48539817|48539996 hsa-miR-4656 1 0 0
chr16:48539817|48539996 hsa-miR-4689 1 0 0
chr16:48539817|48539996 hsa-miR-4706 1 0 0
chr16:48539817|48539996 hsa-miR-4710 1 0 0
chr16:48539817|48539996 hsa-miR-4739 1 0 0
chr16:48539817|48539996 hsa-miR-5572 1 0 0
chr16:48539817|48539996 hsa-miR-6081 1 0 0
chr16:48539817|48539996 hsa-miR-6090 1 0 0
chr16:48539817|48539996 hsa-miR-6127 1 0 0
chr16:48539817|48539996 hsa-miR-6133 1 0 0
chr16:48539817|48539996 hsa-miR-6134 1 0 0
chr16:48539817|48539996 hsa-miR-8085 1 0 0
chr16:48539817|48539996 hsa-miR-12119 1 0 0
chr16:48539817|48539996 hsa-miR-4433b-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6734-5p 1 0 0
chr16:48539817|48539996 hsa-miR-504-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6747-5p 1 0 0
chr16:48539817|48539996 hsa-miR-671-5p 1 0 0
chr16:48539817|48539996 hsa-miR-7106-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6799-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1236-5p 1 0 0
chr16:48539817|48539996 hsa-miR-5187-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6089 1 0 0
chr16:48539817|48539996 hsa-miR-3192-5p 1 0 0
chr16:48539817|48539996 hsa-miR-7847-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6759-5p 1 0 0
chr16:48539817|48539996 hsa-miR-432-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6871-5p 1 0 0
chr16:48539817|48539996 hsa-miR-3151-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6732-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6881-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6782-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1226-5p 1 0 0
chr16:48539817|48539996 hsa-miR-204-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6834-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4787-5p 1 0 0
chr16:48539817|48539996 hsa-miR-149-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6824-5p 1 0 0
chr16:48539817|48539996 hsa-miR-3162-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4664-3p 1 0 0
chr16:48539817|48539996 hsa-miR-1207-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1233-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1273h-5p 1 0 0
chr16:48539817|48539996 hsa-miR-3689b-3p 1 0 0
chr16:48539817|48539996 hsa-miR-4763-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6769b-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6778-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6812-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6870-5p 1 0 0
chr16:48539817|48539996 hsa-miR-5001-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6726-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6752-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6754-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6803-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6842-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6851-5p 1 0 0
chr16:48539817|48539996 hsa-miR-7110-5p 1 0 0
chr16:48539817|48539996 hsa-miR-10401-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1249-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6722-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6751-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6763-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6779-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6780a-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6788-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6797-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6808-5p 1 0 0
chr16:48539817|48539996 hsa-miR-7111-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4728-5p 1 0 0
chr16:48539817|48539996 hsa-miR-5196-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6780b-5p 1 0 0
chr16:48539817|48539996 hsa-miR-1909-3p 1 0 0
chr16:48539817|48539996 hsa-miR-3689a-3p 1 0 0
chr16:48539817|48539996 hsa-miR-4649-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4745-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4749-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6729-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6777-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6889-5p 1 0 0
chr16:48539817|48539996 hsa-miR-939-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4758-5p 1 0 0
chr16:48539817|48539996 hsa-miR-6736-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4700-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4646-5p 1 0 0
chr16:48539817|48539996 hsa-miR-4716-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6750-5p 1 0 0
chr16:48539817|48539996 hsa-miR-135a-2-3p 1 0 0
chr16:48539817|48539996 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:48539817|48539996
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MQGRAGALSWCTWLDRTFPASHHFPHSQ
Nucleotide Sequence CTGCAAGGCCGCGCTGGGGCTCTGTCTTGGTGCACATGGCTTGACCGGACTTTCCCTGCTTCCCACCACTTCCCTCACTCCCAG
CircID chr16:48539817|48539996
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MRAALGDGPVPGCKAALGLCLGAHGLTGLSLLPTTSLTPR
Nucleotide Sequence CTGAGAGCAGCCCTTGGGGACGGCCCGGTGCCTGGCTGCAAGGCCGCGCTGGGGCTCTGTCTTGGTGCACATGGCTTGACCGGACTTTCCCTGCTTCCCACCACTTCCCTCACTCCCAGA
CircID chr16:48539817|48539996
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MCTKTEPQRGLAARHRAVPKGCSQSAFTWWAKATFANWEVESG
Nucleotide Sequence ATGTGCACCAAGACAGAGCCCCAGCGCGGCCTTGCAGCCAGGCACCGGGCCGTCCCCAAGGGCTGCTCTCAGTCCGCTTTCACTTGGTGGGCGAAAGCCACATTTGCAAACTGGGAAGTGGAGAGTGGG
CircID chr16:48539817|48539996
ORF Type ORF4
Protein Length 59
Nucleotide Length 177
Protein Sequence LGVREVVGSRESPVKPCAPRQSPSAALQPGTGPSPRAALSPLSLGGRKPHLQTGKWRVG
Nucleotide Sequence CTGGGAGTGAGGGAAGTGGTGGGAAGCAGGGAAAGTCCGGTCAAGCCATGTGCACCAAGACAGAGCCCCAGCGCGGCCTTGCAGCCAGGCACCGGGCCGTCCCCAAGGGCTGCTCTCAGTCCGCTTTCACTTGGTGGGCGAAAGCCACATTTGCAAACTGGGAAGTGGAGAGTGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab