CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4883094|4883225
Strand +
CircType exon
Host Gene ENSG00000118898.14;
Algorism CIRI2;
Sequence AGGCACTGGCTGAAGACAGGCAACTCTCGTCCCAACCATCATTCACCCTGAGTGACGTACTTCATCCTCCAATGACTGGACAACTGCGATGCCTTTTCCTCCCTTTTCCTGTACACTCCCAGCAACAAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4883094|4883225 hsa-miR-198 0 0 1
chr16:4883094|4883225 hsa-miR-122-5p 0 0 1
chr16:4883094|4883225 hsa-miR-122-3p 0 0 1
chr16:4883094|4883225 hsa-miR-519e-5p 0 0 1
chr16:4883094|4883225 hsa-miR-519e-3p 0 0 1
chr16:4883094|4883225 hsa-miR-510-5p 0 0 1
chr16:4883094|4883225 hsa-miR-510-3p 0 0 1
chr16:4883094|4883225 hsa-miR-575 0 0 1
chr16:4883094|4883225 hsa-miR-598-5p 0 0 1
chr16:4883094|4883225 hsa-miR-598-3p 0 0 1
chr16:4883094|4883225 hsa-miR-616-5p 0 0 1
chr16:4883094|4883225 hsa-miR-616-3p 0 0 1
chr16:4883094|4883225 hsa-miR-668-5p 0 0 1
chr16:4883094|4883225 hsa-miR-668-3p 0 0 1
chr16:4883094|4883225 hsa-miR-765 1 0 1
chr16:4883094|4883225 hsa-miR-1257 0 1 1
chr16:4883094|4883225 hsa-miR-1266-5p 0 0 1
chr16:4883094|4883225 hsa-miR-1266-3p 0 0 1
chr16:4883094|4883225 hsa-miR-1321 0 0 1
chr16:4883094|4883225 hsa-miR-1825 0 0 1
chr16:4883094|4883225 hsa-miR-515-3p 0 0 1
chr16:4883094|4883225 hsa-miR-1302 0 0 1
chr16:4883094|4883225 hsa-miR-768-5p 0 0 1
chr16:4883094|4883225 hsa-miR-595 1 0 0
chr16:4883094|4883225 hsa-miR-637 1 0 0
chr16:4883094|4883225 hsa-miR-648 1 0 0
chr16:4883094|4883225 hsa-miR-3122 0 1 0
chr16:4883094|4883225 hsa-miR-3138 1 0 0
chr16:4883094|4883225 hsa-miR-3154 1 0 0
chr16:4883094|4883225 hsa-miR-4294 1 0 0
chr16:4883094|4883225 hsa-miR-4270 1 0 0
chr16:4883094|4883225 hsa-miR-4271 1 0 0
chr16:4883094|4883225 hsa-miR-4425 1 0 0
chr16:4883094|4883225 hsa-miR-4441 1 0 0
chr16:4883094|4883225 hsa-miR-3689c 1 0 0
chr16:4883094|4883225 hsa-miR-4518 0 1 0
chr16:4883094|4883225 hsa-miR-548an 0 1 0
chr16:4883094|4883225 hsa-miR-4669 1 0 0
chr16:4883094|4883225 hsa-miR-4706 1 0 0
chr16:4883094|4883225 hsa-miR-4739 1 1 0
chr16:4883094|4883225 hsa-miR-4779 1 0 0
chr16:4883094|4883225 hsa-miR-5698 1 0 0
chr16:4883094|4883225 hsa-miR-6090 1 0 0
chr16:4883094|4883225 hsa-miR-6124 1 1 0
chr16:4883094|4883225 hsa-miR-6127 1 0 0
chr16:4883094|4883225 hsa-miR-6133 1 0 0
chr16:4883094|4883225 hsa-miR-8052 1 0 0
chr16:4883094|4883225 hsa-miR-8068 1 0 0
chr16:4883094|4883225 hsa-miR-214-5p 0 1 0
chr16:4883094|4883225 hsa-miR-92a-1-5p 1 1 0
chr16:4883094|4883225 hsa-miR-4731-5p 1 0 0
chr16:4883094|4883225 hsa-miR-504-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6747-5p 1 0 0
chr16:4883094|4883225 hsa-miR-7106-5p 1 1 0
chr16:4883094|4883225 hsa-miR-6825-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6894-5p 1 1 0
chr16:4883094|4883225 hsa-miR-6799-5p 1 0 0
chr16:4883094|4883225 hsa-miR-766-5p 1 0 0
chr16:4883094|4883225 hsa-miR-3192-5p 1 1 0
chr16:4883094|4883225 hsa-miR-6873-5p 1 0 0
chr16:4883094|4883225 hsa-miR-7847-3p 1 0 0
chr16:4883094|4883225 hsa-miR-8069 1 1 0
chr16:4883094|4883225 hsa-miR-5589-5p 1 0 0
chr16:4883094|4883225 hsa-miR-432-5p 1 0 0
chr16:4883094|4883225 hsa-miR-7845-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6716-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6871-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6772-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6732-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6760-5p 1 0 0
chr16:4883094|4883225 hsa-miR-3150b-3p 1 0 0
chr16:4883094|4883225 hsa-miR-7109-5p 1 0 0
chr16:4883094|4883225 hsa-miR-204-3p 1 0 0
chr16:4883094|4883225 hsa-miR-30c-2-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6514-3p 0 1 0
chr16:4883094|4883225 hsa-miR-92b-5p 1 0 0
chr16:4883094|4883225 hsa-miR-4787-5p 1 0 0
chr16:4883094|4883225 hsa-miR-149-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6824-5p 1 0 0
chr16:4883094|4883225 hsa-miR-3162-5p 1 0 0
chr16:4883094|4883225 hsa-miR-758-5p 0 1 0
chr16:4883094|4883225 hsa-miR-483-5p 1 0 0
chr16:4883094|4883225 hsa-miR-5585-5p 0 1 0
chr16:4883094|4883225 hsa-miR-4423-5p 0 1 0
chr16:4883094|4883225 hsa-miR-1233-5p 1 0 0
chr16:4883094|4883225 hsa-miR-1273h-5p 1 0 0
chr16:4883094|4883225 hsa-miR-3689b-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6778-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6752-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6754-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6803-5p 1 0 0
chr16:4883094|4883225 hsa-miR-7110-5p 1 0 0
chr16:4883094|4883225 hsa-miR-11181-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6751-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6763-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6779-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6780a-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6797-5p 1 0 0
chr16:4883094|4883225 hsa-miR-4728-5p 1 0 0
chr16:4883094|4883225 hsa-miR-10526-3p 1 0 0
chr16:4883094|4883225 hsa-miR-328-5p 1 0 0
chr16:4883094|4883225 hsa-miR-3689a-3p 1 0 0
chr16:4883094|4883225 hsa-miR-6729-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6777-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6795-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6883-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6889-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6831-5p 1 0 0
chr16:4883094|4883225 hsa-miR-7151-3p 1 0 0
chr16:4883094|4883225 hsa-miR-3173-3p 1 0 0
chr16:4883094|4883225 hsa-miR-4646-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6785-5p 1 0 0
chr16:4883094|4883225 hsa-miR-6849-5p 1 0 0
chr16:4883094|4883225 hsa-miR-9851-5p 1 0 0
chr16:4883094|4883225 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:4883094|4883225
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MAEDRQLSSQPSFTLSDVLHPPMTGQLRCLFLPFPVHSQQQT
Nucleotide Sequence CTGGCTGAAGACAGGCAACTCTCGTCCCAACCATCATTCACCCTGAGTGACGTACTTCATCCTCCAATGACTGGACAACTGCGATGCCTTTTCCTCCCTTTTCCTGTACACTCCCAGCAACAAACT
CircID chr16:4883094|4883225
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MLLGVYRKREEKASQLSSHWRMKYVTQGE
Nucleotide Sequence TTGTTGCTGGGAGTGTACAGGAAAAGGGAGGAAAAGGCATCGCAGTTGTCCAGTCATTGGAGGATGAAGTACGTCACTCAGGGTGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab