CircRNA Information

General Information
circRNA Basic Information
CircID chr16:4885628|4885777
Strand -
CircType exon
Host Gene ENSG00000118898.14;
Algorism CIRI2;
Sequence CTCATCCGCCTGGGCCCTGTCAGGCTCGATGCGCAGGACCTCCTTGACCACGTACTCCTGCCCCCCGTCTCTGGTCTCCTGCTCCAGGGCACGCAGCTGCAGCTGCAGTGCCTCCAGCTCCTCCTGCAGCAGCTGGTTCTTGTGCTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:4885628|4885777 hsa-miR-15a-5p 0 0 1
chr16:4885628|4885777 hsa-miR-15a-3p 0 0 1
chr16:4885628|4885777 hsa-miR-15b-5p 0 0 1
chr16:4885628|4885777 hsa-miR-15b-3p 0 0 1
chr16:4885628|4885777 hsa-miR-195-5p 0 0 1
chr16:4885628|4885777 hsa-miR-195-3p 0 0 1
chr16:4885628|4885777 hsa-miR-424-5p 0 0 1
chr16:4885628|4885777 hsa-miR-424-3p 0 0 1
chr16:4885628|4885777 hsa-miR-497-5p 0 0 1
chr16:4885628|4885777 hsa-miR-497-3p 0 0 1
chr16:4885628|4885777 hsa-miR-650 0 0 1
chr16:4885628|4885777 hsa-miR-1301-5p 0 0 1
chr16:4885628|4885777 hsa-miR-1301-3p 0 0 1
chr16:4885628|4885777 hsa-miR-765 0 0 1
chr16:4885628|4885777 hsa-miR-874-5p 0 0 1
chr16:4885628|4885777 hsa-miR-874-3p 0 0 1
chr16:4885628|4885777 hsa-miR-708-5p 0 0 1
chr16:4885628|4885777 hsa-miR-708-3p 0 0 1
chr16:4885628|4885777 hsa-miR-1205 0 0 1
chr16:4885628|4885777 hsa-miR-1286 0 0 1
chr16:4885628|4885777 hsa-miR-1255a 0 0 1
chr16:4885628|4885777 hsa-miR-486-3p 1 0 1
chr16:4885628|4885777 hsa-miR-146b-3p 0 0 1
chr16:4885628|4885777 hsa-miR-1184 0 0 1
chr16:4885628|4885777 hsa-miR-483-5p 1 0 1
chr16:4885628|4885777 hsa-miR-28-5p 0 0 1
chr16:4885628|4885777 hsa-miR-509-3-5p 0 1 1
chr16:4885628|4885777 hsa-miR-509-5p 0 0 1
chr16:4885628|4885777 hsa-miR-548b-3p 0 0 1
chr16:4885628|4885777 hsa-miR-16 0 0 1
chr16:4885628|4885777 hsa-miR-1255b 0 0 1
chr16:4885628|4885777 hsa-miR-637 1 0 0
chr16:4885628|4885777 hsa-miR-663a 1 0 0
chr16:4885628|4885777 hsa-miR-658 1 0 0
chr16:4885628|4885777 hsa-miR-940 1 0 0
chr16:4885628|4885777 hsa-miR-1202 1 0 0
chr16:4885628|4885777 hsa-miR-1539 0 1 0
chr16:4885628|4885777 hsa-miR-2861 1 0 0
chr16:4885628|4885777 hsa-miR-3141 1 0 0
chr16:4885628|4885777 hsa-miR-3196 1 0 0
chr16:4885628|4885777 hsa-miR-4293 0 1 0
chr16:4885628|4885777 hsa-miR-4298 1 0 0
chr16:4885628|4885777 hsa-miR-3918 0 1 0
chr16:4885628|4885777 hsa-miR-3135b 0 1 0
chr16:4885628|4885777 hsa-miR-4466 1 0 0
chr16:4885628|4885777 hsa-miR-4488 1 0 0
chr16:4885628|4885777 hsa-miR-4526 0 1 0
chr16:4885628|4885777 hsa-miR-3960 1 0 0
chr16:4885628|4885777 hsa-miR-4688 1 0 0
chr16:4885628|4885777 hsa-miR-4706 1 0 0
chr16:4885628|4885777 hsa-miR-5047 0 1 0
chr16:4885628|4885777 hsa-miR-5090 1 0 0
chr16:4885628|4885777 hsa-miR-5787 1 0 0
chr16:4885628|4885777 hsa-miR-6081 1 1 0
chr16:4885628|4885777 hsa-miR-6127 1 0 0
chr16:4885628|4885777 hsa-miR-6165 1 1 0
chr16:4885628|4885777 hsa-miR-8072 1 0 0
chr16:4885628|4885777 hsa-miR-8089 1 0 0
chr16:4885628|4885777 hsa-miR-12118 0 1 0
chr16:4885628|4885777 hsa-miR-4731-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4433a-3p 1 1 0
chr16:4885628|4885777 hsa-miR-6765-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6894-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6510-5p 1 1 0
chr16:4885628|4885777 hsa-miR-3692-5p 1 0 0
chr16:4885628|4885777 hsa-miR-139-3p 1 0 0
chr16:4885628|4885777 hsa-miR-4786-5p 1 1 0
chr16:4885628|4885777 hsa-miR-4768-3p 1 1 0
chr16:4885628|4885777 hsa-miR-6089 1 0 0
chr16:4885628|4885777 hsa-miR-4695-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6746-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4722-5p 1 1 0
chr16:4885628|4885777 hsa-miR-593-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6721-5p 1 1 0
chr16:4885628|4885777 hsa-miR-7845-5p 1 0 0
chr16:4885628|4885777 hsa-miR-503-5p 1 0 0
chr16:4885628|4885777 hsa-miR-3180-3p 1 0 0
chr16:4885628|4885777 hsa-miR-6829-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6881-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6874-5p 1 1 0
chr16:4885628|4885777 hsa-miR-6821-5p 1 0 0
chr16:4885628|4885777 hsa-miR-5006-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6835-5p 1 0 0
chr16:4885628|4885777 hsa-miR-7109-5p 1 0 0
chr16:4885628|4885777 hsa-miR-1229-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4640-5p 1 0 0
chr16:4885628|4885777 hsa-miR-1908-5p 1 0 0
chr16:4885628|4885777 hsa-miR-1228-5p 1 0 0
chr16:4885628|4885777 hsa-miR-92b-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6749-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4787-5p 1 0 0
chr16:4885628|4885777 hsa-miR-149-3p 1 0 0
chr16:4885628|4885777 hsa-miR-6781-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4776-5p 1 0 0
chr16:4885628|4885777 hsa-miR-7112-5p 1 0 0
chr16:4885628|4885777 hsa-miR-7160-3p 0 1 0
chr16:4885628|4885777 hsa-miR-423-5p 1 0 0
chr16:4885628|4885777 hsa-miR-16-5p 0 1 0
chr16:4885628|4885777 hsa-miR-10400-5p 1 0 0
chr16:4885628|4885777 hsa-miR-1207-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4763-3p 1 0 0
chr16:4885628|4885777 hsa-miR-6787-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6816-5p 1 0 0
chr16:4885628|4885777 hsa-miR-5001-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6726-5p 1 1 0
chr16:4885628|4885777 hsa-miR-6743-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6769a-5p 1 0 0
chr16:4885628|4885777 hsa-miR-11181-3p 1 1 0
chr16:4885628|4885777 hsa-miR-6722-3p 1 0 0
chr16:4885628|4885777 hsa-miR-6808-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6879-5p 1 0 0
chr16:4885628|4885777 hsa-miR-7111-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4728-5p 1 0 0
chr16:4885628|4885777 hsa-miR-5196-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6780b-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6836-5p 0 1 0
chr16:4885628|4885777 hsa-miR-10396b-5p 1 0 0
chr16:4885628|4885777 hsa-miR-1237-5p 1 0 0
chr16:4885628|4885777 hsa-miR-328-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4725-3p 1 0 0
chr16:4885628|4885777 hsa-miR-4726-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6738-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6795-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6846-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6848-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6887-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4436b-3p 1 0 0
chr16:4885628|4885777 hsa-miR-4697-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6885-5p 1 0 0
chr16:4885628|4885777 hsa-miR-939-5p 1 1 0
chr16:4885628|4885777 hsa-miR-6758-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4665-5p 1 0 0
chr16:4885628|4885777 hsa-miR-4747-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6791-5p 1 0 0
chr16:4885628|4885777 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:4885628|4885777
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MGPVRLDAQDLLDHVLLPPVSGLLLQGTQLQLQCLQLLLQQLVLVLL
Nucleotide Sequence CTGGGCCCTGTCAGGCTCGATGCGCAGGACCTCCTTGACCACGTACTCCTGCCCCCCGTCTCTGGTCTCCTGCTCCAGGGCACGCAGCTGCAGCTGCAGTGCCTCCAGCTCCTCCTGCAGCAGCTGGTTCTTGTGCTGCTC
CircID chr16:4885628|4885777
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MSGSMRRTSLTTYSCPPSLVSCSRARSCSCSASSSSCSSWFLCC
Nucleotide Sequence CTGTCAGGCTCGATGCGCAGGACCTCCTTGACCACGTACTCCTGCCCCCCGTCTCTGGTCTCCTGCTCCAGGGCACGCAGCTGCAGCTGCAGTGCCTCCAGCTCCTCCTGCAGCAGCTGGTTCTTGTGCTGC
CircID chr16:4885628|4885777
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADE
Nucleotide Sequence CTGCTGCAGGAGGAGCTGGAGGCACTGCAGCTGCAGCTGCGTGCCCTGGAGCAGGAGACCAGAGACGGGGGGCAGGAGTACGTGGTCAAGGAGGTCCTGCGCATCGAGCCTGACAGGGCCCAGGCGGATGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab