CircRNA Information

General Information
circRNA Basic Information
CircID chr16:519870|520259
Strand +
CircType exon
Host Gene ENSG00000090565.14;
Algorism CIRI2;
Sequence CTCCTGCTCCAGCTCGCTCTCCCGGGCGCGGCTGTGGTACTCCTGCAGGCCCATGCTGCTGCTGCGGCCCCGCCGCTGCTCGGCCTCCAGCTTGAGGAGCTGCAGGTGCTCCAGCTGCTTTCGGAGGTCCTCGATCAGCTGCAGGGCAACCGTGCAGTGAGCCGGGGGGCCTGGGCTCCCAGGGGCCACCGTCAGCCATCACTTGGCTGTAGAACCTCAGGGTTGATCTGGCCGTCTCTCGGGAGGACGACACACACCAGCGGCTATGCCCAAAGCAGCACAGCCAAGAGCTAGCGTCTCAGGAAACAAAGGCTCCCCGTGGGGCAGGCTGGGCGCAGGACTGGGCGTGGGGCAGGGTGGGTGCTCACCTCCTGGGTGGCCTCCTTGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:519870|520259 hsa-miR-15a-5p 0 0 1
chr16:519870|520259 hsa-miR-15a-3p 0 0 1
chr16:519870|520259 hsa-miR-107 0 1 1
chr16:519870|520259 hsa-miR-15b-5p 0 0 1
chr16:519870|520259 hsa-miR-15b-3p 0 0 1
chr16:519870|520259 hsa-miR-195-5p 0 0 1
chr16:519870|520259 hsa-miR-195-3p 0 0 1
chr16:519870|520259 hsa-miR-424-5p 0 0 1
chr16:519870|520259 hsa-miR-424-3p 0 0 1
chr16:519870|520259 hsa-miR-497-5p 0 0 1
chr16:519870|520259 hsa-miR-497-3p 0 0 1
chr16:519870|520259 hsa-miR-503-5p 0 0 1
chr16:519870|520259 hsa-miR-503-3p 0 0 1
chr16:519870|520259 hsa-miR-596 0 1 1
chr16:519870|520259 hsa-miR-611 0 1 1
chr16:519870|520259 hsa-miR-646 0 0 1
chr16:519870|520259 hsa-miR-647 0 0 1
chr16:519870|520259 hsa-miR-650 0 0 1
chr16:519870|520259 hsa-miR-1301-5p 0 0 1
chr16:519870|520259 hsa-miR-1301-3p 0 0 1
chr16:519870|520259 hsa-miR-874-5p 0 0 1
chr16:519870|520259 hsa-miR-874-3p 0 0 1
chr16:519870|520259 hsa-miR-744-5p 0 0 1
chr16:519870|520259 hsa-miR-744-3p 0 0 1
chr16:519870|520259 hsa-miR-665 0 1 1
chr16:519870|520259 hsa-miR-920 0 0 1
chr16:519870|520259 hsa-miR-939-5p 0 0 1
chr16:519870|520259 hsa-miR-939-3p 0 0 1
chr16:519870|520259 hsa-miR-1200 0 0 1
chr16:519870|520259 hsa-miR-663b 0 0 1
chr16:519870|520259 hsa-miR-1205 0 0 1
chr16:519870|520259 hsa-miR-1286 0 0 1
chr16:519870|520259 hsa-miR-139-5p 0 0 1
chr16:519870|520259 hsa-miR-139-3p 0 0 1
chr16:519870|520259 hsa-miR-146b-3p 0 0 1
chr16:519870|520259 hsa-miR-1184 0 1 1
chr16:519870|520259 hsa-miR-1207-3p 0 0 1
chr16:519870|520259 hsa-miR-331-3p 0 1 1
chr16:519870|520259 hsa-miR-140-3p 0 0 1
chr16:519870|520259 hsa-miR-324-3p 0 0 1
chr16:519870|520259 hsa-miR-125a-5p 0 1 1
chr16:519870|520259 hsa-miR-369-5p 0 0 1
chr16:519870|520259 hsa-miR-151-5p 0 0 1
chr16:519870|520259 hsa-miR-125b 0 0 1
chr16:519870|520259 hsa-miR-103 0 0 1
chr16:519870|520259 hsa-miR-16 0 0 1
chr16:519870|520259 hsa-miR-138 0 0 1
chr16:519870|520259 hsa-miR-663 0 0 1
chr16:519870|520259 hsa-miR-554 0 1 0
chr16:519870|520259 hsa-miR-562 0 1 0
chr16:519870|520259 hsa-miR-663a 1 1 0
chr16:519870|520259 hsa-miR-1913 0 1 0
chr16:519870|520259 hsa-miR-3131 0 1 0
chr16:519870|520259 hsa-miR-544b 0 1 0
chr16:519870|520259 hsa-miR-3153 1 0 0
chr16:519870|520259 hsa-miR-320e 0 1 0
chr16:519870|520259 hsa-miR-3197 1 0 0
chr16:519870|520259 hsa-miR-4324 0 1 0
chr16:519870|520259 hsa-miR-4329 0 1 0
chr16:519870|520259 hsa-miR-3909 1 0 0
chr16:519870|520259 hsa-miR-3945 1 1 0
chr16:519870|520259 hsa-miR-3135b 1 1 0
chr16:519870|520259 hsa-miR-4467 1 0 0
chr16:519870|520259 hsa-miR-4480 0 1 0
chr16:519870|520259 hsa-miR-3960 1 1 0
chr16:519870|520259 hsa-miR-4706 1 0 0
chr16:519870|520259 hsa-miR-4751 0 1 0
chr16:519870|520259 hsa-miR-5047 0 1 0
chr16:519870|520259 hsa-miR-6860 0 1 0
chr16:519870|520259 hsa-miR-7706 1 0 0
chr16:519870|520259 hsa-miR-7974 1 1 0
chr16:519870|520259 hsa-miR-7978 0 1 0
chr16:519870|520259 hsa-miR-8072 1 1 0
chr16:519870|520259 hsa-miR-8085 1 1 0
chr16:519870|520259 hsa-miR-138-5p 1 1 0
chr16:519870|520259 hsa-miR-128-1-5p 1 1 0
chr16:519870|520259 hsa-miR-1247-3p 1 1 0
chr16:519870|520259 hsa-miR-6879-3p 1 0 0
chr16:519870|520259 hsa-miR-27a-5p 1 0 0
chr16:519870|520259 hsa-miR-125a-3p 1 0 0
chr16:519870|520259 hsa-miR-3663-3p 0 1 0
chr16:519870|520259 hsa-miR-6089 1 1 0
chr16:519870|520259 hsa-miR-3192-5p 0 1 0
chr16:519870|520259 hsa-miR-6880-5p 1 0 0
chr16:519870|520259 hsa-miR-4695-5p 0 1 0
chr16:519870|520259 hsa-miR-6746-5p 0 1 0
chr16:519870|520259 hsa-miR-4722-5p 0 1 0
chr16:519870|520259 hsa-miR-8069 0 1 0
chr16:519870|520259 hsa-miR-6849-3p 0 1 0
chr16:519870|520259 hsa-miR-656-5p 0 1 0
chr16:519870|520259 hsa-miR-6827-5p 0 1 0
chr16:519870|520259 hsa-miR-1343-3p 0 1 0
chr16:519870|520259 hsa-miR-6786-5p 1 1 0
chr16:519870|520259 hsa-miR-6852-5p 0 1 0
chr16:519870|520259 hsa-miR-4793-5p 0 1 0
chr16:519870|520259 hsa-miR-4763-5p 0 1 0
chr16:519870|520259 hsa-miR-1908-3p 1 0 0
chr16:519870|520259 hsa-miR-6771-5p 1 0 0
chr16:519870|520259 hsa-miR-889-5p 0 1 0
chr16:519870|520259 hsa-miR-3677-3p 1 0 0
chr16:519870|520259 hsa-miR-103a-3p 0 1 0
chr16:519870|520259 hsa-miR-6736-3p 0 1 0
chr16:519870|520259 hsa-miR-7162-3p 0 1 0
chr16:519870|520259 hsa-miR-4707-5p 0 1 0
chr16:519870|520259 hsa-miR-6804-3p 0 1 0
chr16:519870|520259 hsa-miR-4758-3p 0 1 0
chr16:519870|520259 hsa-miR-1910-5p 1 1 0
chr16:519870|520259 hsa-miR-1288-5p 0 1 0
chr16:519870|520259 hsa-miR-6871-3p 0 1 0
chr16:519870|520259 hsa-miR-6752-3p 0 1 0
chr16:519870|520259 hsa-miR-1914-5p 1 1 0
chr16:519870|520259 hsa-miR-3620-3p 0 1 0
chr16:519870|520259 hsa-miR-1911-5p 0 1 0
chr16:519870|520259 hsa-miR-4433b-5p 0 1 0
chr16:519870|520259 hsa-miR-6838-3p 0 1 0
chr16:519870|520259 hsa-miR-6732-3p 0 1 0
chr16:519870|520259 hsa-miR-10400-5p 1 0 0
chr16:519870|520259 hsa-miR-1233-5p 1 0 0
chr16:519870|520259 hsa-miR-4763-3p 1 0 0
chr16:519870|520259 hsa-miR-6787-5p 0 1 0
chr16:519870|520259 hsa-miR-1343-5p 1 1 0
chr16:519870|520259 hsa-miR-6754-5p 0 1 0
chr16:519870|520259 hsa-miR-6756-5p 1 0 0
chr16:519870|520259 hsa-miR-6862-5p 1 0 0
chr16:519870|520259 hsa-miR-10396a-5p 0 1 0
chr16:519870|520259 hsa-miR-10396b-5p 0 1 0
chr16:519870|520259 hsa-miR-1237-5p 1 0 0
chr16:519870|520259 hsa-miR-4632-5p 1 0 0
chr16:519870|520259 hsa-miR-4726-5p 1 0 0
chr16:519870|520259 hsa-miR-6889-5p 0 1 0
chr16:519870|520259 hsa-miR-4723-5p 1 0 0
chr16:519870|520259 hsa-miR-10394-3p 1 0 0
chr16:519870|520259 hsa-miR-6731-5p 1 1 0
chr16:519870|520259 hsa-miR-3689d 0 1 0
chr16:519870|520259 hsa-miR-6724-5p 1 0 0
chr16:519870|520259 hsa-miR-6791-5p 0 1 0
chr16:519870|520259 hsa-miR-7114-3p 0 1 0
chr16:519870|520259 hsa-miR-4701-5p 1 0 0
chr16:519870|520259 hsa-miR-6504-5p 0 1 0
chr16:519870|520259 hsa-miR-1912-5p 0 1 0
chr16:519870|520259 hsa-miR-4524a-5p 0 1 0
chr16:519870|520259 hsa-miR-4524b-5p 0 1 0
chr16:519870|520259 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:519870|520259
ORF Type ORF1
Protein Length 96
Nucleotide Length 291
Protein Sequence MLQLALPGAAVVLLQAHAAAAAPPLLGLQLEELQVLQLLSEVLDQLQGNRAVSRGAWAPRGHRQPSLGCRTSGLIWPSLGRTTHTSGYAQSSTAKS
Nucleotide Sequence CTGCTCCAGCTCGCTCTCCCGGGCGCGGCTGTGGTACTCCTGCAGGCCCATGCTGCTGCTGCGGCCCCGCCGCTGCTCGGCCTCCAGCTTGAGGAGCTGCAGGTGCTCCAGCTGCTTTCGGAGGTCCTCGATCAGCTGCAGGGCAACCGTGCAGTGAGCCGGGGGGCCTGGGCTCCCAGGGGCCACCGTCAGCCATCACTTGGCTGTAGAACCTCAGGGTTGATCTGGCCGTCTCTCGGGAGGACGACACACACCAGCGGCTATGCCCAAAGCAGCACAGCCAAGAGCTAG
CircID chr16:519870|520259
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MWYSCRPMLLLRPRRCSASSLRSCRCSSCFRRSSISCRATVQ
Nucleotide Sequence CTGTGGTACTCCTGCAGGCCCATGCTGCTGCTGCGGCCCCGCCGCTGCTCGGCCTCCAGCTTGAGGAGCTGCAGGTGCTCCAGCTGCTTTCGGAGGTCCTCGATCAGCTGCAGGGCAACCGTGCAGTGA
CircID chr16:519870|520259
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MPKAAQPRASVSGNKGSPWGRLGAGLGVGQGGCSPPGWPPC
Nucleotide Sequence ATGCCCAAAGCAGCACAGCCAAGAGCTAGCGTCTCAGGAAACAAAGGCTCCCCGTGGGGCAGGCTGGGCGCAGGACTGGGCGTGGGGCAGGGTGGGTGCTCACCTCCTGGGTGGCCTCCTTGT
CircID chr16:519870|520259
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MAVSREDDTHQRLCPKQHSQELASQETKAPRGAGWAQDWAWGRVGAHLLGGLLV
Nucleotide Sequence CTGGCCGTCTCTCGGGAGGACGACACACACCAGCGGCTATGCCCAAAGCAGCACAGCCAAGAGCTAGCGTCTCAGGAAACAAAGGCTCCCCGTGGGGCAGGCTGGGCGCAGGACTGGGCGTGGGGCAGGGTGGGTGCTCACCTCCTGGGTGGCCTCCTTGTC
CircID chr16:519870|520259
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MPHGEPLFPETLALGCAALGIAAGVCRPPERRPDQP
Nucleotide Sequence CTGCCCCACGGGGAGCCTTTGTTTCCTGAGACGCTAGCTCTTGGCTGTGCTGCTTTGGGCATAGCCGCTGGTGTGTGTCGTCCTCCCGAGAGACGGCCAGATCAACCCTGA
CircID chr16:519870|520259
ORF Type ORF6
Protein Length 65
Nucleotide Length 195
Protein Sequence MTVAPGSPGPPAHCTVALQLIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQE
Nucleotide Sequence CTGACGGTGGCCCCTGGGAGCCCAGGCCCCCCGGCTCACTGCACGGTTGCCCTGCAGCTGATCGAGGACCTCCGAAAGCAGCTGGAGCACCTGCAGCTCCTCAAGCTGGAGGCCGAGCAGCGGCGGGGCCGCAGCAGCAGCATGGGCCTGCAGGAGTACCACAGCCGCGCCCGGGAGAGCGAGCTGGAGCAGGAG
CircID chr16:519870|520259
ORF Type ORF7
Protein Length 94
Nucleotide Length 282
Protein Sequence MCCFGHSRWCVSSSRETARSTLRFYSQVMADGGPWEPRPPGSLHGCPAADRGPPKAAGAPAAPQAGGRAAAGPQQQHGPAGVPQPRPGERAGAG
Nucleotide Sequence CTGTGCTGCTTTGGGCATAGCCGCTGGTGTGTGTCGTCCTCCCGAGAGACGGCCAGATCAACCCTGAGGTTCTACAGCCAAGTGATGGCTGACGGTGGCCCCTGGGAGCCCAGGCCCCCCGGCTCACTGCACGGTTGCCCTGCAGCTGATCGAGGACCTCCGAAAGCAGCTGGAGCACCTGCAGCTCCTCAAGCTGGAGGCCGAGCAGCGGCGGGGCCGCAGCAGCAGCATGGGCCTGCAGGAGTACCACAGCCGCGCCCGGGAGAGCGAGCTGGAGCAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab