CircRNA Information

General Information
circRNA Basic Information
CircID chr16:53439016|53470922
Strand +
CircType exon
Host Gene ENSG00000103479.15;
Algorism find_circ;CIRI2;CIRC
Sequence GGAAATGATCTTCATTGGTTAGCATGTGCCTTATATGTGGCTTGCAGAAAATCTGTTCCAACTGTAAGCAAAGGGACAGTGGAAGGAAACTATGTATCTTTAACTAGAATCCTGAAATGTTCAGAGCAGAGAGTCTCGCATTGTCGCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTTAAGTGATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGCTTAATCGAATTTTTTAATAAGATGAAGAAGTGGGAAGACATGGCAAATCTACCCCCACATTTCAGAGAACGTACTGAGAGATTAGAAAGAAACTTCACTGTTTCTGCTGTAATTTTTAAGAAATATGAACCCATTTTTCAGGACATCTTTAAATACCCTCAAGAGGAGCAACCTCGTCAGCAGCGAGGAAGGAAACAGCGGTATTGCCAATGAAAATGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGGGGCAGGCACAAGCTGTGACAGGCTCCATCCAGCCCCTCAGTGCTCAGGCCCTGGCTGGAAGTCTGAGCTCTCAACAGGTGACAGGAACAACTTTGCAAGTCCCTGGTCAAGTGGCCATTCAACAGATTTCCCCAGGTGGCCAACAGCAGAAGCAAGGCCAGTCTGTAACCAGCAGTAGTAATAGACCCAGGAAGACCAGCTCTTTATCGCTTTTCTTTAGAAAGGTATACCATTTAGCAGCTGTCCGCCTTCGGGATCTCTGTGCCAAACTAGATATTTCAGATGAATTGAGGAAAAAAATCTGGACCTGCTTTGAATTCTCCATAATTCAGTGTCCTGAACTTATGATGGACAGACATCTGGACCAGTTATTAATGTGTGCCATTTATGTGATGGCAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:53439016|53470922 hsa-miR-600 1 1 1
chr16:53439016|53470922 hsa-miR-661 1 1 1
chr16:53439016|53470922 hsa-miR-298 1 1 1
chr16:53439016|53470922 hsa-miR-2110 1 1 1
chr16:53439016|53470922 hsa-miR-2861 1 1 1
chr16:53439016|53470922 hsa-miR-1273c 1 1 1
chr16:53439016|53470922 hsa-miR-4656 1 1 1
chr16:53439016|53470922 hsa-miR-211-3p 1 1 1
chr16:53439016|53470922 hsa-miR-146a-3p 1 1 1
chr16:53439016|53470922 hsa-miR-214-5p 1 1 1
chr16:53439016|53470922 hsa-miR-6765-5p 1 1 1
chr16:53439016|53470922 hsa-miR-6857-5p 1 1 1
chr16:53439016|53470922 hsa-miR-7851-3p 1 1 1
chr16:53439016|53470922 hsa-miR-4459 1 1 1
chr16:53439016|53470922 hsa-miR-6835-5p 1 1 1
chr16:53439016|53470922 hsa-miR-1226-5p 1 1 1
chr16:53439016|53470922 hsa-miR-6894-3p 1 1 1
chr16:53439016|53470922 hsa-miR-6753-5p 1 1 1
chr16:53439016|53470922 hsa-miR-1273g-3p 1 1 1
chr16:53439016|53470922 hsa-miR-1273a 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:53439016|53470922
ORF Type ORF1
Protein Length 178
Nucleotide Length 534
Protein Sequence MNPFFRTSLNTLKRSNLVSSEEGNSGIANENGGITFFPVQVNVGGQAQAVTGSIQPLSAQALAGSLSSQQVTGTTLQVPGQVAIQQISPGGQQQKQGQSVTSSSNRPRKTSSLSLFFRKVYHLAAVRLRDLCAKLDISDELRKKIWTCFEFSIIQCPELMMDRHLDQLLMCAIYVMAK
Nucleotide Sequence ATGAACCCATTTTTCAGGACATCTTTAAATACCCTCAAGAGGAGCAACCTCGTCAGCAGCGAGGAAGGAAACAGCGGTATTGCCAATGAAAATGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGGGGCAGGCACAAGCTGTGACAGGCTCCATCCAGCCCCTCAGTGCTCAGGCCCTGGCTGGAAGTCTGAGCTCTCAACAGGTGACAGGAACAACTTTGCAAGTCCCTGGTCAAGTGGCCATTCAACAGATTTCCCCAGGTGGCCAACAGCAGAAGCAAGGCCAGTCTGTAACCAGCAGTAGTAATAGACCCAGGAAGACCAGCTCTTTATCGCTTTTCTTTAGAAAGGTATACCATTTAGCAGCTGTCCGCCTTCGGGATCTCTGTGCCAAACTAGATATTTCAGATGAATTGAGGAAAAAAATCTGGACCTGCTTTGAATTCTCCATAATTCAGTGTCCTGAACTTATGATGGACAGACATCTGGACCAGTTATTAATGTGTGCCATTTATGTGATGGCAAAG
CircID chr16:53439016|53470922
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MENSKQVQIFFLNSSEISSLAQRSRRRTAAKWYTFLKKSDKELVFLGLLLLLVTDWPCFCCWPPGEIC*
Nucleotide Sequence ATGGAGAATTCAAAGCAGGTCCAGATTTTTTTCCTCAATTCATCTGAAATATCTAGTTTGGCACAGAGATCCCGAAGGCGGACAGCTGCTAAATGGTATACCTTTCTAAAGAAAAGCGATAAAGAGCTGGTCTTCCTGGGTCTATTACTACTGCTGGTTACAGACTGGCCTTGCTTCTGCTGTTGGCCACCTGGGGAAATCTGTTGA
CircID chr16:53439016|53470922
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MEPVTACACPPTLTWTGKNVIPPFSLAIPLFPSSLLTRLLLLRVFKDVLKNGFIFLKNYSRNSEVSF*
Nucleotide Sequence ATGGAGCCTGTCACAGCTTGTGCCTGCCCCCCAACATTGACTTGGACAGGGAAGAATGTTATCCCTCCATTTTCATTGGCAATACCGCTGTTTCCTTCCTCGCTGCTGACGAGGTTGCTCCTCTTGAGGGTATTTAAAGATGTCCTGAAAAATGGGTTCATATTTCTTAAAAATTACAGCAGAAACAGTGAAGTTTCTTTCTAA
CircID chr16:53439016|53470922
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MKKWEDMANLPPHFRERTERLERNFTVSAVIFKKYEPIFQDIFKYPQEEQPRQQRGRKQRYCQ*
Nucleotide Sequence ATGAAGAAGTGGGAAGACATGGCAAATCTACCCCCACATTTCAGAGAACGTACTGAGAGATTAGAAAGAAACTTCACTGTTTCTGCTGTAATTTTTAAGAAATATGAACCCATTTTTCAGGACATCTTTAAATACCCTCAAGAGGAGCAACCTCGTCAGCAGCGAGGAAGGAAACAGCGGTATTGCCAATGA
CircID chr16:53439016|53470922
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MGSYFLKITAETVKFLSNLSVRSLKCGGRFAMSSHFFILLKNSIKL*
Nucleotide Sequence ATGGGTTCATATTTCTTAAAAATTACAGCAGAAACAGTGAAGTTTCTTTCTAATCTCTCAGTACGTTCTCTGAAATGTGGGGGTAGATTTGCCATGTCTTCCCACTTCTTCATCTTATTAAAAAATTCGATTAAGCTGTAA
CircID chr16:53439016|53470922
ORF Type ORF6
Protein Length 88
Nucleotide Length 264
Protein Sequence LLLLLATWGNLLNGHLTRDLQSCSCHLLRAQTSSQGLSTEGLDGACHSLCLPPNIDLDREECYPSIFIGNTAVSFLAADEVAPLEGI*
Nucleotide Sequence TTGCTTCTGCTGTTGGCCACCTGGGGAAATCTGTTGAATGGCCACTTGACCAGGGACTTGCAAAGTTGTTCCTGTCACCTGTTGAGAGCTCAGACTTCCAGCCAGGGCCTGAGCACTGAGGGGCTGGATGGAGCCTGTCACAGCTTGTGCCTGCCCCCCAACATTGACTTGGACAGGGAAGAATGTTATCCCTCCATTTTCATTGGCAATACCGCTGTTTCCTTCCTCGCTGCTGACGAGGTTGCTCCTCTTGAGGGTATTTAA
CircID chr16:53439016|53470922
ORF Type ORF7
Protein Length 58
Nucleotide Length 174
Protein Sequence VACRKSVPTVSKGTVEGNYVSLTRILKCSEQRVSHCRQAGVQWRDLGSLQPPPPRFK*
Nucleotide Sequence GTGGCTTGCAGAAAATCTGTTCCAACTGTAAGCAAAGGGACAGTGGAAGGAAACTATGTATCTTTAACTAGAATCCTGAAATGTTCAGAGCAGAGAGTCTCGCATTGTCGCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTTAAGTGA
CircID chr16:53439016|53470922
ORF Type ORF8
Protein Length 51
Nucleotide Length 153
Protein Sequence SQLLRRLRQENHLNLGGGGCSEPRSRHCTPAWRQCETLCSEHFRILVKDT*
Nucleotide Sequence TCCCAGCTACTCAGGAGGCTGAGGCAGGAAAATCACTTAAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGCGACAATGCGAGACTCTCTGCTCTGAACATTTCAGGATTCTAGTTAAAGATACATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr16:53439016|53470922 RBM5 1 0 0
chr16:53439016|53470922 NOP56 0 1 0
chr16:53439016|53470922 ELAVL1 3 1 4
chr16:53439016|53470922 FAM120A 0 0 3
chr16:53439016|53470922 FKBP4 0 0 1
chr16:53439016|53470922 PRPF8 0 2 5
chr16:53439016|53470922 TAF15 0 0 1
chr16:53439016|53470922 FMR1 1 0 12
chr16:53439016|53470922 CPSF6 0 0 1
chr16:53439016|53470922 TROVE2 0 0 1
chr16:53439016|53470922 FUS 1 0 0
chr16:53439016|53470922 DGCR8 1 0 0
chr16:53439016|53470922 SRSF7 2 0 4
chr16:53439016|53470922 SRSF1 0 0 5
chr16:53439016|53470922 NOP58 0 0 6
chr16:53439016|53470922 RBM27 1 0 0
chr16:53439016|53470922 U2AF1 0 0 5
chr16:53439016|53470922 ADAR 0 0 3
chr16:53439016|53470922 U2AF2 10 4 27
chr16:53439016|53470922 SRSF9 0 0 2
chr16:53439016|53470922 DDX54 0 0 21
chr16:53439016|53470922 HNRNPL 3 1 0
chr16:53439016|53470922 HNRNPA2B1 0 0 1
chr16:53439016|53470922 SF3A3 2 0 1
chr16:53439016|53470922 PCBP2 0 1 0
chr16:53439016|53470922 PTBP1 0 0 3
chr16:53439016|53470922 HNRNPC 17 2 3
chr16:53439016|53470922 TRA2A 0 0 6
chr16:53439016|53470922 HNRNPM 1 0 0
chr16:53439016|53470922 ZNF184 0 0 1
chr16:53439016|53470922 DDX3X 0 0 1
chr16:53439016|53470922 AUH 0 0 1
chr16:53439016|53470922 HNRNPA1 3 0 1
chr16:53439016|53470922 RANGAP1 0 0 1
chr16:53439016|53470922 LIN28B 0 0 2
chr16:53439016|53470922 FXR1 0 1 8
chr16:53439016|53470922 FXR2 0 0 6
chr16:53439016|53470922 SND1 0 0 1
chr16:53439016|53470922 IGF2BP1 0 0 7
chr16:53439016|53470922 IGF2BP3 0 0 6
chr16:53439016|53470922 IGF2BP2 3 2 13
chr16:53439016|53470922 HNRNPUL1 1 0 1
chr16:53439016|53470922 TARDBP 0 0 2
chr16:53439016|53470922 BUD13 0 0 4
chr16:53439016|53470922 RBM47 0 0 1
chr16:53439016|53470922 SLTM 0 0 1
chr16:53439016|53470922 EIF4G2 0 0 1
chr16:53439016|53470922 DDX42 0 0 4
chr16:53439016|53470922 CSTF2T 1 0 3
chr16:53439016|53470922 BCCIP 0 0 2
chr16:53439016|53470922 TARBP2 0 0 1
chr16:53439016|53470922 RBM22 1 0 0
chr16:53439016|53470922 XRN2 0 0 3
chr16:53439016|53470922 AIFM1 0 0 1
chr16:53439016|53470922 EIF4A3 1 0 10
chr16:53439016|53470922 FBL 1 1 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab