CircRNA Information

General Information
circRNA Basic Information
CircID chr16:54283947|54284132
Strand +
CircType exon
Host Gene ENSG00000177508.11;
Algorism CIRI2;
Sequence GCATTTTGTAAAAGGGGACGAAAGTCACTTTTTCAGTCGCCCCTGTCGGCCCTGCGACAGCTCTCCAGGTCCAGCCCAGGCACCCCAGGCGCGGCCGGAGGGTACAGCGCTTGTACCTTCTAGGGGAAGCCTTGCGTGGCTGGGCCCACAGGCCCCTGGGGCGGGTGGCGGTTCTCTGACGCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:54283947|54284132 hsa-miR-185-5p 0 0 1
chr16:54283947|54284132 hsa-miR-185-3p 0 0 1
chr16:54283947|54284132 hsa-miR-492 0 0 1
chr16:54283947|54284132 hsa-miR-518e-5p 0 0 1
chr16:54283947|54284132 hsa-miR-518e-3p 0 0 1
chr16:54283947|54284132 hsa-miR-585-5p 0 0 1
chr16:54283947|54284132 hsa-miR-585-3p 0 0 1
chr16:54283947|54284132 hsa-miR-589-5p 0 0 1
chr16:54283947|54284132 hsa-miR-589-3p 0 0 1
chr16:54283947|54284132 hsa-miR-608 0 0 1
chr16:54283947|54284132 hsa-miR-619-5p 0 0 1
chr16:54283947|54284132 hsa-miR-619-3p 0 0 1
chr16:54283947|54284132 hsa-miR-631 0 0 1
chr16:54283947|54284132 hsa-miR-661 1 1 1
chr16:54283947|54284132 hsa-miR-296-5p 0 0 1
chr16:54283947|54284132 hsa-miR-524-5p 0 0 1
chr16:54283947|54284132 hsa-miR-342-5p 0 0 1
chr16:54283947|54284132 hsa-miR-520d-5p 0 0 1
chr16:54283947|54284132 hsa-miR-550 0 0 1
chr16:54283947|54284132 hsa-miR-1268 0 0 1
chr16:54283947|54284132 hsa-miR-1254 0 0 1
chr16:54283947|54284132 hsa-miR-762 1 1 0
chr16:54283947|54284132 hsa-miR-1231 1 0 0
chr16:54283947|54284132 hsa-miR-1470 0 1 0
chr16:54283947|54284132 hsa-miR-378b 0 1 0
chr16:54283947|54284132 hsa-miR-3135a 1 0 0
chr16:54283947|54284132 hsa-miR-3196 1 0 0
chr16:54283947|54284132 hsa-miR-4296 0 1 0
chr16:54283947|54284132 hsa-miR-4322 1 1 0
chr16:54283947|54284132 hsa-miR-4265 0 1 0
chr16:54283947|54284132 hsa-miR-3652 0 1 0
chr16:54283947|54284132 hsa-miR-3918 0 1 0
chr16:54283947|54284132 hsa-miR-4449 1 0 0
chr16:54283947|54284132 hsa-miR-4505 1 0 0
chr16:54283947|54284132 hsa-miR-4535 0 1 0
chr16:54283947|54284132 hsa-miR-1587 0 1 0
chr16:54283947|54284132 hsa-miR-4741 1 0 0
chr16:54283947|54284132 hsa-miR-6860 1 0 0
chr16:54283947|54284132 hsa-miR-8089 1 0 0
chr16:54283947|54284132 hsa-miR-134-3p 0 1 0
chr16:54283947|54284132 hsa-miR-7155-5p 0 1 0
chr16:54283947|54284132 hsa-miR-6799-5p 1 0 0
chr16:54283947|54284132 hsa-miR-4697-3p 1 0 0
chr16:54283947|54284132 hsa-miR-6805-5p 1 0 0
chr16:54283947|54284132 hsa-miR-6735-3p 0 1 0
chr16:54283947|54284132 hsa-miR-6852-5p 0 1 0
chr16:54283947|54284132 hsa-miR-6749-5p 1 0 0
chr16:54283947|54284132 hsa-miR-6877-5p 1 1 0
chr16:54283947|54284132 hsa-miR-6811-3p 0 1 0
chr16:54283947|54284132 hsa-miR-1180-3p 0 1 0
chr16:54283947|54284132 hsa-miR-3158-3p 0 1 0
chr16:54283947|54284132 hsa-miR-6720-3p 0 1 0
chr16:54283947|54284132 hsa-miR-6746-3p 0 1 0
chr16:54283947|54284132 hsa-miR-7848-3p 0 1 0
chr16:54283947|54284132 hsa-miR-517-5p 0 1 0
chr16:54283947|54284132 hsa-miR-6812-5p 0 1 0
chr16:54283947|54284132 hsa-miR-1343-5p 1 0 0
chr16:54283947|54284132 hsa-miR-5001-5p 1 1 0
chr16:54283947|54284132 hsa-miR-6726-5p 1 0 0
chr16:54283947|54284132 hsa-miR-6737-5p 1 1 0
chr16:54283947|54284132 hsa-miR-6803-5p 1 0 0
chr16:54283947|54284132 hsa-miR-3620-5p 1 1 0
chr16:54283947|54284132 hsa-miR-6836-5p 0 1 0
chr16:54283947|54284132 hsa-miR-4685-5p 1 0 0
chr16:54283947|54284132 hsa-miR-939-5p 1 0 0
chr16:54283947|54284132 hsa-miR-1271-3p 0 1 0
chr16:54283947|54284132 hsa-miR-6773-5p 0 1 0
chr16:54283947|54284132 hsa-miR-10398-3p 1 0 0
chr16:54283947|54284132 hsa-miR-6724-5p 0 1 0
chr16:54283947|54284132 hsa-miR-550a-5p 0 1 0
chr16:54283947|54284132 hsa-miR-6764-5p 0 1 0
chr16:54283947|54284132 hsa-miR-6820-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:54283947|54284132
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MSALRQLSRSSPGTPGAAGGYSACTF
Nucleotide Sequence CTGTCGGCCCTGCGACAGCTCTCCAGGTCCAGCCCAGGCACCCCAGGCGCGGCCGGAGGGTACAGCGCTTGTACCTTCTAG
CircID chr16:54283947|54284132
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MWAQPRKASPRRYKRCTLRPRLGCLGWTWRAVAGPTGATEKVTFVPFYKM
Nucleotide Sequence CTGTGGGCCCAGCCACGCAAGGCTTCCCCTAGAAGGTACAAGCGCTGTACCCTCCGGCCGCGCCTGGGGTGCCTGGGCTGGACCTGGAGAGCTGTCGCAGGGCCGACAGGGGCGACTGAAAAAGTGACTTTCGTCCCCTTTTACAAAATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab