CircRNA Information

General Information
circRNA Basic Information
CircID chr16:54932807|54932903
Strand +
CircType exon
Host Gene ENSG00000176842.13;
Algorism CIRI2;
Sequence CTGCTTCGGGGCCCTCGGGGTCGCCCTTGTCCTCGGGCTTCTGGGGCTCGTCCTCGTCGTTCTTCTCCAGGTCAATGTTCTCCTCCTCTTCCTCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:54932807|54932903 hsa-miR-192-5p 0 0 1
chr16:54932807|54932903 hsa-miR-192-3p 0 0 1
chr16:54932807|54932903 hsa-miR-215-5p 0 0 1
chr16:54932807|54932903 hsa-miR-215-3p 0 0 1
chr16:54932807|54932903 hsa-miR-611 1 1 1
chr16:54932807|54932903 hsa-miR-619-5p 0 0 1
chr16:54932807|54932903 hsa-miR-619-3p 0 0 1
chr16:54932807|54932903 hsa-miR-631 1 0 1
chr16:54932807|54932903 hsa-miR-765 1 1 1
chr16:54932807|54932903 hsa-miR-1253 0 0 1
chr16:54932807|54932903 hsa-miR-1225-3p 0 0 1
chr16:54932807|54932903 hsa-miR-296-5p 0 0 1
chr16:54932807|54932903 hsa-miR-2861 1 0 0
chr16:54932807|54932903 hsa-miR-3125 1 0 0
chr16:54932807|54932903 hsa-miR-3131 1 1 0
chr16:54932807|54932903 hsa-miR-3132 1 0 0
chr16:54932807|54932903 hsa-miR-3154 1 0 0
chr16:54932807|54932903 hsa-miR-3175 1 0 0
chr16:54932807|54932903 hsa-miR-4323 0 1 0
chr16:54932807|54932903 hsa-miR-4271 1 0 0
chr16:54932807|54932903 hsa-miR-3661 1 0 0
chr16:54932807|54932903 hsa-miR-3916 1 0 0
chr16:54932807|54932903 hsa-miR-4510 1 0 0
chr16:54932807|54932903 hsa-miR-4515 1 0 0
chr16:54932807|54932903 hsa-miR-4657 1 0 0
chr16:54932807|54932903 hsa-miR-4688 1 0 0
chr16:54932807|54932903 hsa-miR-4689 1 0 0
chr16:54932807|54932903 hsa-miR-4739 1 0 0
chr16:54932807|54932903 hsa-miR-5698 1 0 0
chr16:54932807|54932903 hsa-miR-6124 1 0 0
chr16:54932807|54932903 hsa-miR-6127 1 0 0
chr16:54932807|54932903 hsa-miR-6133 1 0 0
chr16:54932807|54932903 hsa-miR-8085 1 0 0
chr16:54932807|54932903 hsa-miR-8089 1 0 0
chr16:54932807|54932903 hsa-miR-9500 1 0 0
chr16:54932807|54932903 hsa-miR-12118 1 0 0
chr16:54932807|54932903 hsa-miR-6734-5p 1 0 0
chr16:54932807|54932903 hsa-miR-7106-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6825-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6894-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6799-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6833-5p 1 0 0
chr16:54932807|54932903 hsa-miR-7851-3p 1 0 0
chr16:54932807|54932903 hsa-miR-5187-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6089 1 0 0
chr16:54932807|54932903 hsa-miR-6880-5p 1 0 0
chr16:54932807|54932903 hsa-miR-7847-3p 1 0 0
chr16:54932807|54932903 hsa-miR-4695-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6746-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4709-3p 1 0 0
chr16:54932807|54932903 hsa-miR-3928-3p 1 0 0
chr16:54932807|54932903 hsa-miR-874-3p 1 0 0
chr16:54932807|54932903 hsa-miR-3189-5p 1 0 0
chr16:54932807|54932903 hsa-miR-3180-3p 1 0 0
chr16:54932807|54932903 hsa-miR-6798-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6760-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6782-5p 1 0 0
chr16:54932807|54932903 hsa-miR-3150b-3p 1 1 0
chr16:54932807|54932903 hsa-miR-7855-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6852-5p 1 0 0
chr16:54932807|54932903 hsa-miR-877-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4732-5p 1 0 0
chr16:54932807|54932903 hsa-miR-3202 0 1 0
chr16:54932807|54932903 hsa-miR-3690 1 0 0
chr16:54932807|54932903 hsa-miR-6830-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6824-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6878-5p 1 0 0
chr16:54932807|54932903 hsa-miR-490-3p 1 0 0
chr16:54932807|54932903 hsa-miR-423-5p 1 0 0
chr16:54932807|54932903 hsa-miR-5004-5p 0 1 0
chr16:54932807|54932903 hsa-miR-4763-3p 1 0 0
chr16:54932807|54932903 hsa-miR-6870-5p 1 0 0
chr16:54932807|54932903 hsa-miR-5001-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6743-5p 1 0 0
chr16:54932807|54932903 hsa-miR-7107-5p 1 0 0
chr16:54932807|54932903 hsa-miR-11181-3p 1 0 0
chr16:54932807|54932903 hsa-miR-1249-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6797-5p 1 0 0
chr16:54932807|54932903 hsa-miR-7111-5p 1 0 0
chr16:54932807|54932903 hsa-miR-3620-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6780b-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4649-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6729-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6738-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6794-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6858-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4723-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6831-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6731-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4700-5p 1 0 0
chr16:54932807|54932903 hsa-miR-10398-3p 1 0 0
chr16:54932807|54932903 hsa-miR-3173-3p 1 0 0
chr16:54932807|54932903 hsa-miR-4646-5p 1 0 0
chr16:54932807|54932903 hsa-miR-4716-3p 1 0 0
chr16:54932807|54932903 hsa-miR-6750-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6791-5p 1 0 0
chr16:54932807|54932903 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:54932807|54932903
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence LLRGPRGRPCPRASGARPRRSSPGQCSPPLPR
Nucleotide Sequence CTGCTTCGGGGCCCTCGGGGTCGCCCTTGTCCTCGGGCTTCTGGGGCTCGTCCTCGTCGTTCTTCTCCAGGTCAATGTTCTCCTCCTCTTCCTCGT
CircID chr16:54932807|54932903
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MTWRRTTRTSPRSPRTRATPRAPKQ
Nucleotide Sequence TTGACCTGGAGAAGAACGACGAGGACGAGCCCCAGAAGCCCGAGGACAAGGGCGACCCCGAGGGCCCCGAAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab