CircRNA Information

General Information
circRNA Basic Information
CircID chr16:55505523|55505860
Strand +
CircType exon
Host Gene ENSG00000087245.11;
Algorism CIRI2;
Sequence TGCCCTGTGCCAGGCTGTCGGGCCACCAGTGCCCTCTTGAGACAGTCTCCATTGGCTCCAAGGGTTCTGTGAGCCACAGAAGGTTGTGAAAGGAGAAGAGCCTGAAGTGTGGCAGCACCAGGGCAGCCCAAAGCAGGGCTGCGTTGAAAATATCAAAGTATCTCTTTAGGGGTGGCTCTGAGGGTTGGTGGGATTGGAGGGGGAAGGGGCGCCTGGGAGGAGTACAGTCAGCATCTATTCTTGGGCACCGGGAGGAGCCACTCTCTGGAATCTTAAATTACCAGGTAGGAGTGAGAATGCTGATTAGCTGTAGAGCTGAAGGCACGGCTGCCAGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:55505523|55505860 hsa-miR-95-5p 0 0 1
chr16:55505523|55505860 hsa-miR-95-3p 0 0 1
chr16:55505523|55505860 hsa-miR-335-5p 0 0 1
chr16:55505523|55505860 hsa-miR-335-3p 0 0 1
chr16:55505523|55505860 hsa-miR-484 0 1 1
chr16:55505523|55505860 hsa-miR-432-5p 0 0 1
chr16:55505523|55505860 hsa-miR-432-3p 0 0 1
chr16:55505523|55505860 hsa-miR-583 0 0 1
chr16:55505523|55505860 hsa-miR-619-5p 0 0 1
chr16:55505523|55505860 hsa-miR-619-3p 0 0 1
chr16:55505523|55505860 hsa-miR-874-5p 0 0 1
chr16:55505523|55505860 hsa-miR-874-3p 0 0 1
chr16:55505523|55505860 hsa-miR-942-5p 0 0 1
chr16:55505523|55505860 hsa-miR-942-3p 0 0 1
chr16:55505523|55505860 hsa-miR-943 0 1 1
chr16:55505523|55505860 hsa-miR-1179 0 0 1
chr16:55505523|55505860 hsa-miR-1229-5p 0 0 1
chr16:55505523|55505860 hsa-miR-1229-3p 0 0 1
chr16:55505523|55505860 hsa-miR-1237-5p 0 0 1
chr16:55505523|55505860 hsa-miR-1237-3p 0 0 1
chr16:55505523|55505860 hsa-miR-663b 1 1 1
chr16:55505523|55505860 hsa-miR-1305 0 0 1
chr16:55505523|55505860 hsa-miR-1276 0 0 1
chr16:55505523|55505860 hsa-miR-513b-5p 0 0 1
chr16:55505523|55505860 hsa-miR-513b-3p 0 0 1
chr16:55505523|55505860 hsa-miR-513c-5p 0 0 1
chr16:55505523|55505860 hsa-miR-513c-3p 0 0 1
chr16:55505523|55505860 hsa-miR-139-5p 0 0 1
chr16:55505523|55505860 hsa-miR-885-3p 0 0 1
chr16:55505523|55505860 hsa-miR-146b-3p 0 0 1
chr16:55505523|55505860 hsa-miR-525-5p 0 1 1
chr16:55505523|55505860 hsa-miR-1224-3p 0 0 1
chr16:55505523|55505860 hsa-miR-628-5p 0 0 1
chr16:55505523|55505860 hsa-miR-520a-5p 0 1 1
chr16:55505523|55505860 hsa-miR-483-3p 1 0 1
chr16:55505523|55505860 hsa-miR-1260 0 0 1
chr16:55505523|55505860 hsa-miR-1280 0 0 1
chr16:55505523|55505860 hsa-miR-220c 0 0 1
chr16:55505523|55505860 hsa-miR-24 0 0 1
chr16:55505523|55505860 hsa-miR-764 1 0 0
chr16:55505523|55505860 hsa-miR-1470 1 0 0
chr16:55505523|55505860 hsa-miR-1913 1 0 0
chr16:55505523|55505860 hsa-miR-2861 0 1 0
chr16:55505523|55505860 hsa-miR-1260b 1 0 0
chr16:55505523|55505860 hsa-miR-4268 0 1 0
chr16:55505523|55505860 hsa-miR-4284 0 1 0
chr16:55505523|55505860 hsa-miR-4469 1 0 0
chr16:55505523|55505860 hsa-miR-4490 0 1 0
chr16:55505523|55505860 hsa-miR-1587 0 1 0
chr16:55505523|55505860 hsa-miR-4767 1 0 0
chr16:55505523|55505860 hsa-miR-5192 0 1 0
chr16:55505523|55505860 hsa-miR-5193 1 0 0
chr16:55505523|55505860 hsa-miR-8052 1 0 0
chr16:55505523|55505860 hsa-miR-8073 0 1 0
chr16:55505523|55505860 hsa-miR-8089 1 0 0
chr16:55505523|55505860 hsa-miR-9899 1 0 0
chr16:55505523|55505860 hsa-miR-6749-3p 0 1 0
chr16:55505523|55505860 hsa-miR-18a-3p 0 1 0
chr16:55505523|55505860 hsa-miR-3194-3p 0 1 0
chr16:55505523|55505860 hsa-miR-4726-3p 1 0 0
chr16:55505523|55505860 hsa-miR-205-5p 1 0 0
chr16:55505523|55505860 hsa-miR-6720-5p 1 0 0
chr16:55505523|55505860 hsa-miR-766-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6892-3p 1 0 0
chr16:55505523|55505860 hsa-miR-505-5p 0 1 0
chr16:55505523|55505860 hsa-miR-770-5p 1 0 0
chr16:55505523|55505860 hsa-miR-4728-3p 1 1 0
chr16:55505523|55505860 hsa-miR-877-3p 1 1 0
chr16:55505523|55505860 hsa-miR-2467-5p 1 0 0
chr16:55505523|55505860 hsa-miR-6827-5p 1 0 0
chr16:55505523|55505860 hsa-miR-4436b-5p 1 0 0
chr16:55505523|55505860 hsa-miR-6772-3p 0 1 0
chr16:55505523|55505860 hsa-miR-1226-5p 1 0 0
chr16:55505523|55505860 hsa-miR-4693-3p 0 1 0
chr16:55505523|55505860 hsa-miR-6803-3p 1 0 0
chr16:55505523|55505860 hsa-miR-7113-3p 1 0 0
chr16:55505523|55505860 hsa-miR-7111-3p 1 0 0
chr16:55505523|55505860 hsa-miR-4667-3p 1 0 0
chr16:55505523|55505860 hsa-miR-339-5p 1 0 0
chr16:55505523|55505860 hsa-miR-3189-3p 0 1 0
chr16:55505523|55505860 hsa-miR-1236-3p 1 1 0
chr16:55505523|55505860 hsa-miR-1226-3p 1 0 0
chr16:55505523|55505860 hsa-miR-3180-5p 0 1 0
chr16:55505523|55505860 hsa-miR-4758-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6867-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6887-3p 1 1 0
chr16:55505523|55505860 hsa-miR-6752-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6814-5p 0 1 0
chr16:55505523|55505860 hsa-miR-6826-3p 1 0 0
chr16:55505523|55505860 hsa-miR-5088-3p 1 0 0
chr16:55505523|55505860 hsa-miR-5189-3p 1 1 0
chr16:55505523|55505860 hsa-miR-4749-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6770-3p 1 1 0
chr16:55505523|55505860 hsa-miR-6795-3p 1 0 0
chr16:55505523|55505860 hsa-miR-5195-5p 0 1 0
chr16:55505523|55505860 hsa-miR-4433a-5p 1 0 0
chr16:55505523|55505860 hsa-miR-3173-5p 0 1 0
chr16:55505523|55505860 hsa-miR-6734-3p 1 1 0
chr16:55505523|55505860 hsa-miR-1249-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6729-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6789-3p 1 1 0
chr16:55505523|55505860 hsa-miR-6800-3p 1 0 0
chr16:55505523|55505860 hsa-miR-3162-3p 1 0 0
chr16:55505523|55505860 hsa-miR-3617-3p 0 1 0
chr16:55505523|55505860 hsa-miR-196b-3p 0 1 0
chr16:55505523|55505860 hsa-miR-3127-3p 1 0 0
chr16:55505523|55505860 hsa-miR-320a-5p 1 0 0
chr16:55505523|55505860 hsa-miR-3620-5p 0 1 0
chr16:55505523|55505860 hsa-miR-3199 0 1 0
chr16:55505523|55505860 hsa-miR-6799-3p 0 1 0
chr16:55505523|55505860 hsa-miR-5008-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6762-5p 1 0 0
chr16:55505523|55505860 hsa-miR-6756-3p 1 1 0
chr16:55505523|55505860 hsa-miR-6792-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6801-3p 1 0 0
chr16:55505523|55505860 hsa-miR-6829-3p 1 0 0
chr16:55505523|55505860 hsa-miR-4723-3p 1 0 0
chr16:55505523|55505860 hsa-miR-7114-3p 1 0 0
chr16:55505523|55505860 hsa-miR-4691-5p 1 0 0
chr16:55505523|55505860 hsa-miR-6824-3p 0 1 0
chr16:55505523|55505860 hsa-miR-92b-3p 1 0 0
chr16:55505523|55505860 hsa-miR-130a-5p 0 1 0
chr16:55505523|55505860 hsa-miR-514b-5p 0 1 0
chr16:55505523|55505860 hsa-miR-3064-3p 0 1 0
chr16:55505523|55505860 hsa-miR-7157-5p 0 1 0
chr16:55505523|55505860 hsa-miR-452-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:55505523|55505860
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRVGGIGGGRGAWEEYSQHLFLGTGRSHSLES
Nucleotide Sequence CTGAGGGTTGGTGGGATTGGAGGGGGAAGGGGCGCCTGGGAGGAGTACAGTCAGCATCTATTCTTGGGCACCGGGAGGAGCCACTCTCTGGAATCTTAA
CircID chr16:55505523|55505860
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MVGLEGEGAPGRSTVSIYSWAPGGATLWNLKLPGRSENAD
Nucleotide Sequence TTGGTGGGATTGGAGGGGGAAGGGGCGCCTGGGAGGAGTACAGTCAGCATCTATTCTTGGGCACCGGGAGGAGCCACTCTCTGGAATCTTAAATTACCAGGTAGGAGTGAGAATGCTGATTAG
CircID chr16:55505523|55505860
ORF Type ORF3
Protein Length 79
Nucleotide Length 237
Protein Sequence MKCGSTRAAQSRAALKISKYLFRGGSEGWWDWRGKGRLGGVQSASILGHREEPLSGILNYQVGVRMLISCRAEGTAARP
Nucleotide Sequence CTGAAGTGTGGCAGCACCAGGGCAGCCCAAAGCAGGGCTGCGTTGAAAATATCAAAGTATCTCTTTAGGGGTGGCTCTGAGGGTTGGTGGGATTGGAGGGGGAAGGGGCGCCTGGGAGGAGTACAGTCAGCATCTATTCTTGGGCACCGGGAGGAGCCACTCTCTGGAATCTTAAATTACCAGGTAGGAGTGAGAATGCTGATTAGCTGTAGAGCTGAAGGCACGGCTGCCAGGCCC
CircID chr16:55505523|55505860
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MGCPGAATLQALLLSQPSVAHRTLGANGDCLKRALVARQPGTG
Nucleotide Sequence TTGGGCTGCCCTGGTGCTGCCACACTTCAGGCTCTTCTCCTTTCACAACCTTCTGTGGCTCACAGAACCCTTGGAGCCAATGGAGACTGTCTCAAGAGGGCACTGGTGGCCCGACAGCCTGGCACAGGG
CircID chr16:55505523|55505860
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MLWAALVLPHFRLFSFHNLLWLTEPLEPMETVSRGHWWPDSLAQG
Nucleotide Sequence CTGCTTTGGGCTGCCCTGGTGCTGCCACACTTCAGGCTCTTCTCCTTTCACAACCTTCTGTGGCTCACAGAACCCTTGGAGCCAATGGAGACTGTCTCAAGAGGGCACTGGTGGCCCGACAGCCTGGCACAGGGC
CircID chr16:55505523|55505860
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MIFSTQPCFGLPWCCHTSGSSPFTTFCGSQNPWSQWRLSQEGTGGPTAWHRA
Nucleotide Sequence TTGATATTTTCAACGCAGCCCTGCTTTGGGCTGCCCTGGTGCTGCCACACTTCAGGCTCTTCTCCTTTCACAACCTTCTGTGGCTCACAGAACCCTTGGAGCCAATGGAGACTGTCTCAAGAGGGCACTGGTGGCCCGACAGCCTGGCACAGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab