CircRNA Information

General Information
circRNA Basic Information
CircID chr16:57472453|57472718
Strand +
CircType exon
Host Gene ENSG00000125170.9;
Algorism CIRI2;
Sequence TTCTGCACAGGCTCCTTCCTGCTTTGTAGGCTGGGAAGATGCCCCTGGGGTAGGGGTGCTGATTACCTCAGCCATGTGGAGGAAGGCTGGAGCTTGTTCCTGCCCCAGGAATAGGCCAGGAGGGAAGGCCGCAGCAGGACTGCCGTGGGGAGCACCCCTGCTGCCCCCCTCTCACTGACCAGGGGTGGACAATGCCCAAGCAGAGGGAGCCCCCTTGCCCTGTTTGGCCACCCTCTGGCCAGCCAAAAGCACTCTGAAACCAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:57472453|57472718 hsa-let-7b-5p 0 0 1
chr16:57472453|57472718 hsa-let-7b-3p 0 0 1
chr16:57472453|57472718 hsa-let-7c-5p 0 0 1
chr16:57472453|57472718 hsa-let-7c-3p 0 0 1
chr16:57472453|57472718 hsa-let-7d-5p 0 0 1
chr16:57472453|57472718 hsa-let-7d-3p 0 0 1
chr16:57472453|57472718 hsa-let-7e-5p 0 0 1
chr16:57472453|57472718 hsa-let-7e-3p 0 0 1
chr16:57472453|57472718 hsa-miR-98-5p 0 0 1
chr16:57472453|57472718 hsa-miR-98-3p 0 0 1
chr16:57472453|57472718 hsa-miR-214-5p 0 0 1
chr16:57472453|57472718 hsa-miR-214-3p 0 0 1
chr16:57472453|57472718 hsa-let-7g-5p 0 0 1
chr16:57472453|57472718 hsa-let-7g-3p 0 0 1
chr16:57472453|57472718 hsa-let-7i-5p 0 0 1
chr16:57472453|57472718 hsa-let-7i-3p 0 0 1
chr16:57472453|57472718 hsa-miR-370-5p 0 0 1
chr16:57472453|57472718 hsa-miR-370-3p 0 0 1
chr16:57472453|57472718 hsa-miR-202-5p 0 0 1
chr16:57472453|57472718 hsa-miR-202-3p 0 0 1
chr16:57472453|57472718 hsa-miR-520f-5p 0 0 1
chr16:57472453|57472718 hsa-miR-520f-3p 0 0 1
chr16:57472453|57472718 hsa-miR-635 0 1 1
chr16:57472453|57472718 hsa-miR-647 0 0 1
chr16:57472453|57472718 hsa-miR-766-5p 0 0 1
chr16:57472453|57472718 hsa-miR-766-3p 0 0 1
chr16:57472453|57472718 hsa-miR-298 0 0 1
chr16:57472453|57472718 hsa-miR-873-5p 0 0 1
chr16:57472453|57472718 hsa-miR-873-3p 0 0 1
chr16:57472453|57472718 hsa-miR-1256 0 0 1
chr16:57472453|57472718 hsa-miR-486-3p 0 1 1
chr16:57472453|57472718 hsa-miR-1283 0 1 1
chr16:57472453|57472718 hsa-miR-330-3p 0 1 1
chr16:57472453|57472718 hsa-miR-331-3p 0 0 1
chr16:57472453|57472718 hsa-miR-524-5p 0 1 1
chr16:57472453|57472718 hsa-miR-342-5p 0 1 1
chr16:57472453|57472718 hsa-miR-520d-5p 0 1 1
chr16:57472453|57472718 hsa-miR-642 0 0 1
chr16:57472453|57472718 hsa-let-7a 0 0 1
chr16:57472453|57472718 hsa-let-7f 0 0 1
chr16:57472453|57472718 hsa-miR-761 0 1 0
chr16:57472453|57472718 hsa-miR-1470 1 0 0
chr16:57472453|57472718 hsa-miR-3196 1 1 0
chr16:57472453|57472718 hsa-miR-4297 0 1 0
chr16:57472453|57472718 hsa-miR-4253 1 0 0
chr16:57472453|57472718 hsa-miR-3907 0 1 0
chr16:57472453|57472718 hsa-miR-4476 0 1 0
chr16:57472453|57472718 hsa-miR-4498 1 0 0
chr16:57472453|57472718 hsa-miR-4533 0 1 0
chr16:57472453|57472718 hsa-miR-4688 0 1 0
chr16:57472453|57472718 hsa-miR-5681b 0 1 0
chr16:57472453|57472718 hsa-miR-6131 0 1 0
chr16:57472453|57472718 hsa-miR-6165 0 1 0
chr16:57472453|57472718 hsa-miR-7977 0 1 0
chr16:57472453|57472718 hsa-miR-141-5p 0 1 0
chr16:57472453|57472718 hsa-miR-4435 0 1 0
chr16:57472453|57472718 hsa-miR-504-3p 1 0 0
chr16:57472453|57472718 hsa-miR-6747-3p 1 0 0
chr16:57472453|57472718 hsa-miR-149-5p 1 0 0
chr16:57472453|57472718 hsa-miR-6720-5p 1 0 0
chr16:57472453|57472718 hsa-miR-6804-5p 0 1 0
chr16:57472453|57472718 hsa-miR-3926 0 1 0
chr16:57472453|57472718 hsa-miR-6721-5p 0 1 0
chr16:57472453|57472718 hsa-miR-34a-3p 0 1 0
chr16:57472453|57472718 hsa-miR-6849-3p 1 1 0
chr16:57472453|57472718 hsa-miR-659-3p 1 0 0
chr16:57472453|57472718 hsa-miR-6805-5p 0 1 0
chr16:57472453|57472718 hsa-miR-1343-3p 0 1 0
chr16:57472453|57472718 hsa-miR-3667-3p 0 1 0
chr16:57472453|57472718 hsa-miR-4667-3p 0 1 0
chr16:57472453|57472718 hsa-miR-6789-5p 1 0 0
chr16:57472453|57472718 hsa-miR-7162-3p 0 1 0
chr16:57472453|57472718 hsa-miR-4708-3p 1 1 0
chr16:57472453|57472718 hsa-miR-1250-5p 1 0 0
chr16:57472453|57472718 hsa-miR-4687-5p 1 0 0
chr16:57472453|57472718 hsa-miR-508-5p 0 1 0
chr16:57472453|57472718 hsa-miR-1910-5p 1 1 0
chr16:57472453|57472718 hsa-miR-4746-3p 1 0 0
chr16:57472453|57472718 hsa-miR-6880-3p 0 1 0
chr16:57472453|57472718 hsa-miR-6734-3p 0 1 0
chr16:57472453|57472718 hsa-miR-5002-5p 1 0 0
chr16:57472453|57472718 hsa-miR-3162-3p 0 1 0
chr16:57472453|57472718 hsa-miR-3617-3p 0 1 0
chr16:57472453|57472718 hsa-miR-4763-3p 1 0 0
chr16:57472453|57472718 hsa-miR-6775-5p 1 0 0
chr16:57472453|57472718 hsa-miR-6743-5p 1 1 0
chr16:57472453|57472718 hsa-miR-6774-5p 0 1 0
chr16:57472453|57472718 hsa-miR-328-5p 1 1 0
chr16:57472453|57472718 hsa-miR-4632-5p 1 0 0
chr16:57472453|57472718 hsa-miR-4649-5p 1 1 0
chr16:57472453|57472718 hsa-miR-4664-5p 0 1 0
chr16:57472453|57472718 hsa-miR-7843-5p 0 1 0
chr16:57472453|57472718 hsa-miR-6876-5p 0 1 0
chr16:57472453|57472718 hsa-miR-10398-5p 0 1 0
chr16:57472453|57472718 hsa-miR-6791-5p 1 1 0
chr16:57472453|57472718 hsa-miR-6893-3p 0 1 0
chr16:57472453|57472718 hsa-miR-6792-3p 1 1 0
chr16:57472453|57472718 hsa-miR-3059-5p 1 0 0
chr16:57472453|57472718 hsa-miR-6512-3p 0 1 0
chr16:57472453|57472718 hsa-miR-4691-5p 0 1 0
chr16:57472453|57472718 hsa-miR-3619-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:57472453|57472718
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MLCRLGRCPWGRGADYLSHVEEGWSLFLPQE
Nucleotide Sequence CTGCTTTGTAGGCTGGGAAGATGCCCCTGGGGTAGGGGTGCTGATTACCTCAGCCATGTGGAGGAAGGCTGGAGCTTGTTCCTGCCCCAGGAATAG
CircID chr16:57472453|57472718
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MTRGGQCPSRGSPLALFGHPLASQKHSETK
Nucleotide Sequence CTGACCAGGGGTGGACAATGCCCAAGCAGAGGGAGCCCCCTTGCCCTGTTTGGCCACCCTCTGGCCAGCCAAAAGCACTCTGAAACCAAG
CircID chr16:57472453|57472718
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MITSAMWRKAGACSCPRNRPGGKAAAGLPWGAPLLPPSH
Nucleotide Sequence CTGATTACCTCAGCCATGTGGAGGAAGGCTGGAGCTTGTTCCTGCCCCAGGAATAGGCCAGGAGGGAAGGCCGCAGCAGGACTGCCGTGGGGAGCACCCCTGCTGCCCCCCTCTCACTGA
CircID chr16:57472453|57472718
ORF Type ORF4
Protein Length 56
Nucleotide Length 171
Protein Sequence MELVPAPGIGQEGRPQQDCRGEHPCCPPLTDQGWTMPKQREPPCPVWPPSGQPKAL
Nucleotide Sequence CTGGAGCTTGTTCCTGCCCCAGGAATAGGCCAGGAGGGAAGGCCGCAGCAGGACTGCCGTGGGGAGCACCCCTGCTGCCCCCCTCTCACTGACCAGGGGTGGACAATGCCCAAGCAGAGGGAGCCCCCTTGCCCTGTTTGGCCACCCTCTGGCCAGCCAAAAGCACTCTGA
CircID chr16:57472453|57472718
ORF Type ORF5
Protein Length 66
Nucleotide Length 201
Protein Sequence MVSECFWLARGWPNRARGLPLLGHCPPLVSERGAAGVLPTAVLLRPSLLAYSWGRNKLQPSSTWLR
Nucleotide Sequence TTGGTTTCAGAGTGCTTTTGGCTGGCCAGAGGGTGGCCAAACAGGGCAAGGGGGCTCCCTCTGCTTGGGCATTGTCCACCCCTGGTCAGTGAGAGGGGGGCAGCAGGGGTGCTCCCCACGGCAGTCCTGCTGCGGCCTTCCCTCCTGGCCTATTCCTGGGGCAGGAACAAGCTCCAGCCTTCCTCCACATGGCTGAGGTAA
CircID chr16:57472453|57472718
ORF Type ORF6
Protein Length 43
Nucleotide Length 132
Protein Sequence MGIVHPWSVRGGQQGCSPRQSCCGLPSWPIPGAGTSSSLPPHG
Nucleotide Sequence TTGGGCATTGTCCACCCCTGGTCAGTGAGAGGGGGGCAGCAGGGGTGCTCCCCACGGCAGTCCTGCTGCGGCCTTCCCTCCTGGCCTATTCCTGGGGCAGGAACAAGCTCCAGCCTTCCTCCACATGGCTGA
CircID chr16:57472453|57472718
ORF Type ORF7
Protein Length 36
Nucleotide Length 108
Protein Sequence MGQEQAPAFLHMAEVISTPTPGASSQPTKQEGACAE
Nucleotide Sequence CTGGGGCAGGAACAAGCTCCAGCCTTCCTCCACATGGCTGAGGTAATCAGCACCCCTACCCCAGGGGCATCTTCCCAGCCTACAAAGCAGGAAGGAGCCTGTGCAGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab