CircRNA Information

General Information
circRNA Basic Information
CircID chr16:58519495|58519691
Strand +
CircType exon
Host Gene ENSG00000103037.10;
Algorism CIRI2;
Sequence CCAGTTTTAATATCCTTTTCCCCCAGGTATTTTTTTTTTTTTTTTAAAGAAAATGAGTAGATACGTATTTAAAAACTTAACCCACTTAAAATTTGCCTTACCTTTCATGACTGTCAAGTTTTATGGCCAGAGAGGACAAAACAGTTCAAAATTAAATAATTGAAGTCCTCCTTGAGTGATGTCTTAGGGTTTATTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:58519495|58519691 hsa-miR-326 0 0 1
chr16:58519495|58519691 hsa-miR-452-5p 0 0 1
chr16:58519495|58519691 hsa-miR-452-3p 0 0 1
chr16:58519495|58519691 hsa-miR-488-5p 0 0 1
chr16:58519495|58519691 hsa-miR-488-3p 0 0 1
chr16:58519495|58519691 hsa-miR-506-5p 0 0 1
chr16:58519495|58519691 hsa-miR-506-3p 0 0 1
chr16:58519495|58519691 hsa-miR-619-5p 0 0 1
chr16:58519495|58519691 hsa-miR-619-3p 0 0 1
chr16:58519495|58519691 hsa-miR-625-5p 0 0 1
chr16:58519495|58519691 hsa-miR-625-3p 0 0 1
chr16:58519495|58519691 hsa-miR-637 0 0 1
chr16:58519495|58519691 hsa-miR-641 0 0 1
chr16:58519495|58519691 hsa-miR-944 0 0 1
chr16:58519495|58519691 hsa-miR-548e-5p 0 0 1
chr16:58519495|58519691 hsa-miR-548e-3p 0 0 1
chr16:58519495|58519691 hsa-miR-548m 0 0 1
chr16:58519495|58519691 hsa-miR-1275 1 1 1
chr16:58519495|58519691 hsa-miR-330-5p 0 0 1
chr16:58519495|58519691 hsa-miR-548a-3p 0 0 1
chr16:58519495|58519691 hsa-miR-590-3p 0 0 1
chr16:58519495|58519691 hsa-miR-548f 0 0 1
chr16:58519495|58519691 hsa-miR-124 0 0 1
chr16:58519495|58519691 hsa-miR-499-3p 0 0 1
chr16:58519495|58519691 hsa-miR-3909 1 1 0
chr16:58519495|58519691 hsa-miR-4525 1 0 0
chr16:58519495|58519691 hsa-miR-6124 0 1 0
chr16:58519495|58519691 hsa-miR-8089 1 0 0
chr16:58519495|58519691 hsa-miR-6894-5p 1 0 0
chr16:58519495|58519691 hsa-miR-7851-3p 1 1 0
chr16:58519495|58519691 hsa-miR-5187-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6746-5p 1 0 0
chr16:58519495|58519691 hsa-miR-3187-3p 0 1 0
chr16:58519495|58519691 hsa-miR-203b-3p 0 1 0
chr16:58519495|58519691 hsa-miR-6798-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6852-5p 1 0 0
chr16:58519495|58519691 hsa-miR-7109-5p 1 0 0
chr16:58519495|58519691 hsa-miR-652-5p 0 1 0
chr16:58519495|58519691 hsa-miR-3191-5p 0 1 0
chr16:58519495|58519691 hsa-miR-6870-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6803-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6751-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6797-5p 1 0 0
chr16:58519495|58519691 hsa-miR-7111-5p 1 0 0
chr16:58519495|58519691 hsa-miR-892c-3p 0 1 0
chr16:58519495|58519691 hsa-miR-6795-5p 1 1 0
chr16:58519495|58519691 hsa-miR-6887-5p 1 0 0
chr16:58519495|58519691 hsa-miR-6511a-5p 1 0 0
chr16:58519495|58519691 hsa-miR-4716-3p 1 0 0
chr16:58519495|58519691 hsa-miR-4667-5p 1 0 0
chr16:58519495|58519691 hsa-miR-3059-5p 0 1 0
chr16:58519495|58519691 hsa-miR-4723-3p 0 1 0
chr16:58519495|58519691 hsa-miR-6769b-3p 0 1 0
chr16:58519495|58519691 hsa-miR-4676-3p 0 1 0
chr16:58519495|58519691 hsa-miR-3922-3p 1 0 0
chr16:58519495|58519691 hsa-miR-499a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:58519495|58519691
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MSRYVFKNLTHLKFALPFMTVKFYGQRGQNSSKLNN
Nucleotide Sequence ATGAGTAGATACGTATTTAAAAACTTAACCCACTTAAAATTTGCCTTACCTTTCATGACTGTCAAGTTTTATGGCCAGAGAGGACAAAACAGTTCAAAATTAAATAATTGA
CircID chr16:58519495|58519691
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MTVMKGKANFKWVKFLNTYLLIFFKKKKKIPGGKGY
Nucleotide Sequence TTGACAGTCATGAAAGGTAAGGCAAATTTTAAGTGGGTTAAGTTTTTAAATACGTATCTACTCATTTTCTTTAAAAAAAAAAAAAAAATACCTGGGGGAAAAGGATATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab