CircRNA Information

General Information
circRNA Basic Information
CircID chr16:58560212|58560362
Strand -
CircType exon
Host Gene ENSG00000125107.17;
Algorism find_circ;CIRI2;DCC;
Sequence GAGTGTTTCTCAGGAGCTATCAGAAACTATCCTCACCATGGTAGCCAATTGCAGTAATGTTATGAATAAGGCCAGACAACCACCACCTGGAGTTATGCCAAAAGGACGTCCTCCTAGTGCTAGCAGCTTAGATGCCATTTCTCCTGTTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:58560212|58560362 hsa-miR-15a-5p 0 0 1
chr16:58560212|58560362 hsa-miR-15a-3p 0 0 1
chr16:58560212|58560362 hsa-miR-15b-5p 0 0 1
chr16:58560212|58560362 hsa-miR-15b-3p 0 0 1
chr16:58560212|58560362 hsa-miR-195-5p 0 0 1
chr16:58560212|58560362 hsa-miR-195-3p 0 0 1
chr16:58560212|58560362 hsa-miR-424-5p 0 0 1
chr16:58560212|58560362 hsa-miR-424-3p 0 0 1
chr16:58560212|58560362 hsa-miR-497-5p 0 0 1
chr16:58560212|58560362 hsa-miR-497-3p 0 0 1
chr16:58560212|58560362 hsa-miR-520f-5p 0 0 1
chr16:58560212|58560362 hsa-miR-520f-3p 0 0 1
chr16:58560212|58560362 hsa-miR-503-5p 0 0 1
chr16:58560212|58560362 hsa-miR-503-3p 0 0 1
chr16:58560212|58560362 hsa-miR-619-5p 0 0 1
chr16:58560212|58560362 hsa-miR-619-3p 0 0 1
chr16:58560212|58560362 hsa-miR-621 0 0 1
chr16:58560212|58560362 hsa-miR-646 0 0 1
chr16:58560212|58560362 hsa-miR-708-5p 0 0 1
chr16:58560212|58560362 hsa-miR-708-3p 0 0 1
chr16:58560212|58560362 hsa-miR-1266-5p 0 0 1
chr16:58560212|58560362 hsa-miR-1266-3p 0 0 1
chr16:58560212|58560362 hsa-miR-512-3p 0 0 1
chr16:58560212|58560362 hsa-miR-361-5p 0 0 1
chr16:58560212|58560362 hsa-miR-28-5p 0 1 1
chr16:58560212|58560362 hsa-miR-409-3p 0 0 1
chr16:58560212|58560362 hsa-miR-220b 0 0 1
chr16:58560212|58560362 hsa-miR-16 0 0 1
chr16:58560212|58560362 hsa-miR-3139 0 1 0
chr16:58560212|58560362 hsa-miR-4254 0 1 0
chr16:58560212|58560362 hsa-miR-3659 0 1 0
chr16:58560212|58560362 hsa-miR-6080 0 1 0
chr16:58560212|58560362 hsa-miR-3677-5p 1 0 0
chr16:58560212|58560362 hsa-miR-6776-3p 0 1 0
chr16:58560212|58560362 hsa-miR-3664-3p 0 1 0
chr16:58560212|58560362 hsa-miR-4726-5p 1 0 0
chr16:58560212|58560362 hsa-miR-4633-3p 0 1 0
chr16:58560212|58560362 hsa-miR-9851-5p 0 1 0
chr16:58560212|58560362 hsa-miR-4676-5p 1 0 0
chr16:58560212|58560362 hsa-miR-6500-5p 0 1 0
chr16:58560212|58560362 hsa-miR-4524b-5p 0 1 0
chr16:58560212|58560362 hsa-miR-4662a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:58560212|58560362
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MASKLLALGGRPFGITPGGGCLALFITLLQLATMVRIVSDSS*
Nucleotide Sequence ATGGCATCTAAGCTGCTAGCACTAGGAGGACGTCCTTTTGGCATAACTCCAGGTGGTGGTTGTCTGGCCTTATTCATAACATTACTGCAATTGGCTACCATGGTGAGGATAGTTTCTGATAGCTCCTGA
CircID chr16:58560212|58560362
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQ
Nucleotide Sequence ATGGTAGCCAATTGCAGTAATGTTATGAATAAGGCCAGACAACCACCACCTGGAGTTATGCCAAAAGGACGTCCTCCTAGTGCTAGCAGCTTAGATGCCATTTCTCCTGTTCAG
CircID chr16:58560212|58560362
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MASKLLALGGRPFGITPGGGCLALFITLLQLATMVRIVSDSS
Nucleotide Sequence ATGGCATCTAAGCTGCTAGCACTAGGAGGACGTCCTTTTGGCATAACTCCAGGTGGTGGTTGTCTGGCCTTATTCATAACATTACTGCAATTGGCTACCATGGTGAGGATAGTTTCTGATAGCTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr16:58560212|58560362 KHSRP 0 2 0
chr16:58560212|58560362 MOV10 0 3 0
chr16:58560212|58560362 FKBP4 0 1 0
chr16:58560212|58560362 PRPF8 0 6 1
chr16:58560212|58560362 SRSF10 0 1 0
chr16:58560212|58560362 TNRC6A 0 2 0
chr16:58560212|58560362 NUDT21 1 0 0
chr16:58560212|58560362 TROVE2 0 2 0
chr16:58560212|58560362 GNL3 0 1 0
chr16:58560212|58560362 DGCR8 0 4 0
chr16:58560212|58560362 PTBP1 14 11 0
chr16:58560212|58560362 METTL14 0 2 0
chr16:58560212|58560362 DHX9 1 0 0
chr16:58560212|58560362 DDX3X 0 1 0
chr16:58560212|58560362 LARP7 0 4 0
chr16:58560212|58560362 ACIN1 0 2 2
chr16:58560212|58560362 RANGAP1 0 2 1
chr16:58560212|58560362 FXR1 0 2 1
chr16:58560212|58560362 FXR2 0 0 1
chr16:58560212|58560362 GTF2F1 0 1 0
chr16:58560212|58560362 RBM47 0 1 1
chr16:58560212|58560362 SLTM 0 2 0
chr16:58560212|58560362 DDX42 0 1 0
chr16:58560212|58560362 CSTF2T 3 4 1
chr16:58560212|58560362 VIM 0 2 0
chr16:58560212|58560362 RNF219 0 1 0
chr16:58560212|58560362 TIAL1 0 2 0
chr16:58560212|58560362 YWHAG 0 1 0
chr16:58560212|58560362 ELAVL1 20 16 1
chr16:58560212|58560362 ELAVL3 0 1 0
chr16:58560212|58560362 KHDRBS1 0 1 0
chr16:58560212|58560362 PUM2 0 1 0
chr16:58560212|58560362 SRSF7 0 2 0
chr16:58560212|58560362 SRSF1 0 7 0
chr16:58560212|58560362 SRSF3 0 1 0
chr16:58560212|58560362 U2AF1 1 4 0
chr16:58560212|58560362 ADAR 0 1 0
chr16:58560212|58560362 U2AF2 26 23 1
chr16:58560212|58560362 SRSF9 0 2 0
chr16:58560212|58560362 DDX54 0 3 5
chr16:58560212|58560362 SF3A3 0 2 0
chr16:58560212|58560362 ZNF184 0 1 0
chr16:58560212|58560362 XRN2 0 1 0
chr16:58560212|58560362 LIN28B 2 4 0
chr16:58560212|58560362 LIN28A 0 2 0
chr16:58560212|58560362 BCCIP 0 2 0
chr16:58560212|58560362 FTO 0 1 0
chr16:58560212|58560362 RBFOX2 1 6 0
chr16:58560212|58560362 SAFB2 0 1 0
chr16:58560212|58560362 RBM27 0 1 0
chr16:58560212|58560362 RBM22 0 3 0
chr16:58560212|58560362 HNRNPK 0 2 0
chr16:58560212|58560362 AIFM1 0 2 0
chr16:58560212|58560362 EIF4A3 1 4 1
chr16:58560212|58560362 AGO2 0 2 0
chr16:58560212|58560362 FAM120A 0 2 0
chr16:58560212|58560362 CNBP 0 1 1
chr16:58560212|58560362 UPF1 2 0 0
chr16:58560212|58560362 TAF15 1 1 0
chr16:58560212|58560362 FUS 0 0 1
chr16:58560212|58560362 HNRNPU 0 2 0
chr16:58560212|58560362 RBM10 2 0 0
chr16:58560212|58560362 HNRNPL 0 1 0
chr16:58560212|58560362 HNRNPM 1 0 0
chr16:58560212|58560362 HNRNPC 53 33 0
chr16:58560212|58560362 WTAP 0 1 0
chr16:58560212|58560362 SMNDC1 0 4 0
chr16:58560212|58560362 AUH 0 4 0
chr16:58560212|58560362 HNRNPA1 1 8 0
chr16:58560212|58560362 SND1 0 4 0
chr16:58560212|58560362 IGF2BP1 0 1 0
chr16:58560212|58560362 IGF2BP3 0 2 1
chr16:58560212|58560362 IGF2BP2 4 7 2
chr16:58560212|58560362 MBNL2 0 4 0
chr16:58560212|58560362 HNRNPUL1 0 3 0
chr16:58560212|58560362 TARDBP 4 3 0
chr16:58560212|58560362 YTHDC1 0 1 0
chr16:58560212|58560362 BUD13 0 1 0
chr16:58560212|58560362 ZFP36 0 2 0
chr16:58560212|58560362 FBL 2 3 1
chr16:58560212|58560362 NUMA1 0 2 0
chr16:58560212|58560362 SF3B4 1 2 0
chr16:58560212|58560362 SF3B1 0 2 0
chr16:58560212|58560362 CPSF7 1 3 0
chr16:58560212|58560362 FMR1 0 6 5
chr16:58560212|58560362 CPSF6 0 1 0
chr16:58560212|58560362 CPSF1 3 0 0
chr16:58560212|58560362 NOP58 2 3 2
chr16:58560212|58560362 NOP56 1 2 0
chr16:58560212|58560362 LSM11 0 2 0
chr16:58560212|58560362 HNRNPA2B1 0 5 0
chr16:58560212|58560362 FIP1L1 2 1 0
chr16:58560212|58560362 TRA2A 0 4 0
chr16:58560212|58560362 ZC3H7B 0 1 0
chr16:58560212|58560362 SBDS 0 1 0
chr16:58560212|58560362 MSI2 0 0 1
chr16:58560212|58560362 NPM1 0 2 0
chr16:58560212|58560362 CSTF2 2 1 0
chr16:58560212|58560362 DKC1 0 3 0
chr16:58560212|58560362 ILF3 0 2 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab