CircRNA Information

General Information
circRNA Basic Information
CircID chr16:66509906|66510143
Strand +
CircType exon
Host Gene ENSG00000166548.14;
Algorism CIRI2;
Sequence CCAATAACTCCTTCACCTAAGCCCTGTTGTTGATTTTGAAGTGCTTCCTAGGCCAGTGATTTTAGCTTCTGCCAGCTGCTTTTGCCAGTAGATTAACGTGTTTTTATTTTTCAAACTCCGTGTTTCCTAACGTGGAGTGTATGGGTCTAAGAGAGCCTGCTGTCCTCCCTGCCTTCCACCTTGGAGAGGAGGCTGGACGCATCAGCAGTGGCCAGGGCAGGTCGCAAAATCTCCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:66509906|66510143 hsa-miR-214-5p 0 0 1
chr16:66509906|66510143 hsa-miR-214-3p 0 0 1
chr16:66509906|66510143 hsa-miR-34b-5p 0 0 1
chr16:66509906|66510143 hsa-miR-34b-3p 0 0 1
chr16:66509906|66510143 hsa-miR-484 0 0 1
chr16:66509906|66510143 hsa-miR-193b-5p 0 0 1
chr16:66509906|66510143 hsa-miR-193b-3p 0 0 1
chr16:66509906|66510143 hsa-miR-588 0 0 1
chr16:66509906|66510143 hsa-miR-646 0 0 1
chr16:66509906|66510143 hsa-miR-298 0 1 1
chr16:66509906|66510143 hsa-miR-874-5p 0 0 1
chr16:66509906|66510143 hsa-miR-874-3p 0 0 1
chr16:66509906|66510143 hsa-miR-892b 0 0 1
chr16:66509906|66510143 hsa-miR-940 0 0 1
chr16:66509906|66510143 hsa-miR-1258 0 0 1
chr16:66509906|66510143 hsa-miR-1252-5p 0 0 1
chr16:66509906|66510143 hsa-miR-1252-3p 0 0 1
chr16:66509906|66510143 hsa-miR-1321 0 0 1
chr16:66509906|66510143 hsa-miR-146b-3p 0 0 1
chr16:66509906|66510143 hsa-miR-1207-3p 0 0 1
chr16:66509906|66510143 hsa-miR-1207-5p 1 1 1
chr16:66509906|66510143 hsa-miR-193a-3p 1 1 1
chr16:66509906|66510143 hsa-miR-515-5p 0 0 1
chr16:66509906|66510143 hsa-miR-548d-3p 0 0 1
chr16:66509906|66510143 hsa-miR-450a 0 0 1
chr16:66509906|66510143 hsa-miR-596 1 0 0
chr16:66509906|66510143 hsa-miR-601 1 0 0
chr16:66509906|66510143 hsa-miR-637 0 1 0
chr16:66509906|66510143 hsa-miR-657 1 0 0
chr16:66509906|66510143 hsa-miR-3135a 0 1 0
chr16:66509906|66510143 hsa-miR-3176 1 1 0
chr16:66509906|66510143 hsa-miR-3684 0 1 0
chr16:66509906|66510143 hsa-miR-3945 1 0 0
chr16:66509906|66510143 hsa-miR-1268b 1 0 0
chr16:66509906|66510143 hsa-miR-4441 0 1 0
chr16:66509906|66510143 hsa-miR-4496 0 1 0
chr16:66509906|66510143 hsa-miR-4498 1 0 0
chr16:66509906|66510143 hsa-miR-4656 1 0 0
chr16:66509906|66510143 hsa-miR-4706 1 1 0
chr16:66509906|66510143 hsa-miR-4739 1 1 0
chr16:66509906|66510143 hsa-miR-6085 1 0 0
chr16:66509906|66510143 hsa-miR-6132 1 0 0
chr16:66509906|66510143 hsa-miR-8063 1 1 0
chr16:66509906|66510143 hsa-miR-12114 0 1 0
chr16:66509906|66510143 hsa-miR-18a-3p 0 1 0
chr16:66509906|66510143 hsa-miR-93-3p 0 1 0
chr16:66509906|66510143 hsa-miR-31-5p 1 0 0
chr16:66509906|66510143 hsa-miR-671-5p 1 0 0
chr16:66509906|66510143 hsa-miR-27a-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6833-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6515-5p 0 1 0
chr16:66509906|66510143 hsa-miR-3192-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6880-5p 1 1 0
chr16:66509906|66510143 hsa-miR-7847-3p 0 1 0
chr16:66509906|66510143 hsa-miR-4695-5p 1 0 0
chr16:66509906|66510143 hsa-miR-1301-3p 1 0 0
chr16:66509906|66510143 hsa-miR-138-1-3p 1 0 0
chr16:66509906|66510143 hsa-miR-6849-3p 0 1 0
chr16:66509906|66510143 hsa-miR-6772-5p 1 0 0
chr16:66509906|66510143 hsa-miR-3190-3p 0 1 0
chr16:66509906|66510143 hsa-miR-2467-3p 1 0 0
chr16:66509906|66510143 hsa-miR-5088-5p 1 0 0
chr16:66509906|66510143 hsa-miR-4763-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6784-5p 1 0 0
chr16:66509906|66510143 hsa-miR-3127-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6823-5p 1 0 0
chr16:66509906|66510143 hsa-miR-4715-5p 0 1 0
chr16:66509906|66510143 hsa-miR-3190-5p 0 1 0
chr16:66509906|66510143 hsa-miR-664b-5p 1 0 0
chr16:66509906|66510143 hsa-miR-597-3p 0 1 0
chr16:66509906|66510143 hsa-miR-6868-5p 0 1 0
chr16:66509906|66510143 hsa-miR-7159-5p 0 1 0
chr16:66509906|66510143 hsa-miR-1233-5p 1 0 0
chr16:66509906|66510143 hsa-miR-4763-3p 0 1 0
chr16:66509906|66510143 hsa-miR-6778-5p 1 1 0
chr16:66509906|66510143 hsa-miR-6787-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6865-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6893-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6775-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6754-5p 0 1 0
chr16:66509906|66510143 hsa-miR-7107-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6722-3p 1 0 0
chr16:66509906|66510143 hsa-miR-6808-5p 1 1 0
chr16:66509906|66510143 hsa-miR-6879-5p 0 1 0
chr16:66509906|66510143 hsa-miR-3620-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6836-5p 1 0 0
chr16:66509906|66510143 hsa-miR-4685-5p 1 1 0
chr16:66509906|66510143 hsa-miR-6735-5p 0 1 0
chr16:66509906|66510143 hsa-miR-1910-3p 1 0 0
chr16:66509906|66510143 hsa-miR-6511a-5p 1 0 0
chr16:66509906|66510143 hsa-miR-9851-5p 0 1 0
chr16:66509906|66510143 hsa-miR-6512-3p 0 1 0
chr16:66509906|66510143 hsa-miR-4756-5p 0 1 0
chr16:66509906|66510143 hsa-miR-3619-5p 1 0 0
chr16:66509906|66510143 hsa-miR-6781-3p 0 1 0
chr16:66509906|66510143 hsa-miR-450a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:66509906|66510143
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MLSSLPSTLERRLDASAVARAGRKISQ
Nucleotide Sequence CTGCTGTCCTCCCTGCCTTCCACCTTGGAGAGGAGGCTGGACGCATCAGCAGTGGCCAGGGCAGGTCGCAAAATCTCCCAG
CircID chr16:66509906|66510143
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MPAAFASRLTCFYFSNSVFPNVECMGLREPAVLPAFHLGEEAGRISSGQGRSQNLP
Nucleotide Sequence CTGCCAGCTGCTTTTGCCAGTAGATTAACGTGTTTTTATTTTTCAAACTCCGTGTTTCCTAACGTGGAGTGTATGGGTCTAAGAGAGCCTGCTGTCCTCCCTGCCTTCCACCTTGGAGAGGAGGCTGGACGCATCAGCAGTGGCCAGGGCAGGTCGCAAAATCTCCCA
CircID chr16:66509906|66510143
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MPWPLLMRPASSPRWKAGRTAGSLRPIHSTLGNTEFEK
Nucleotide Sequence CTGCCCTGGCCACTGCTGATGCGTCCAGCCTCCTCTCCAAGGTGGAAGGCAGGGAGGACAGCAGGCTCTCTTAGACCCATACACTCCACGTTAGGAAACACGGAGTTTGAAAAATAA
CircID chr16:66509906|66510143
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MKNKNTLIYWQKQLAEAKITGLGSTSKSTTGLR
Nucleotide Sequence TTGAAAAATAAAAACACGTTAATCTACTGGCAAAAGCAGCTGGCAGAAGCTAAAATCACTGGCCTAGGAAGCACTTCAAAATCAACAACAGGGCTTAGGTGA
CircID chr16:66509906|66510143
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MRPALATADASSLLSKVEGREDSRLS
Nucleotide Sequence TTGCGACCTGCCCTGGCCACTGCTGATGCGTCCAGCCTCCTCTCCAAGGTGGAAGGCAGGGAGGACAGCAGGCTCTCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab