CircRNA Information

General Information
circRNA Basic Information
CircID chr16:66577641|66577842
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCCTCCCAACCCCCTGAATCTTCCAAGCATTTGATCTGCCATTTCTTTTGAGTCCCAATTTGTCCCAGTCTTGTGGCCCAGAGCAAGGTATTTAACCTCAGTTCCTATATCTGTACAAATGAGAGTTGTAAAGATTAAGTCAGAGTGTGCCCTGCTTGGTGCAGGGCATATACTGGGCACTTCAACATGTGGCAGTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:66577641|66577842 hsa-miR-326 0 1 1
chr16:66577641|66577842 hsa-miR-345-5p 0 0 1
chr16:66577641|66577842 hsa-miR-345-3p 0 0 1
chr16:66577641|66577842 hsa-miR-573 0 0 1
chr16:66577641|66577842 hsa-miR-579-5p 0 0 1
chr16:66577641|66577842 hsa-miR-579-3p 0 0 1
chr16:66577641|66577842 hsa-miR-612 0 0 1
chr16:66577641|66577842 hsa-miR-653-5p 0 0 1
chr16:66577641|66577842 hsa-miR-653-3p 0 0 1
chr16:66577641|66577842 hsa-miR-874-5p 0 0 1
chr16:66577641|66577842 hsa-miR-874-3p 0 0 1
chr16:66577641|66577842 hsa-miR-888-5p 0 0 1
chr16:66577641|66577842 hsa-miR-888-3p 0 0 1
chr16:66577641|66577842 hsa-miR-767-5p 0 0 1
chr16:66577641|66577842 hsa-miR-146b-3p 0 0 1
chr16:66577641|66577842 hsa-miR-330-5p 0 1 1
chr16:66577641|66577842 hsa-miR-1302 0 0 1
chr16:66577641|66577842 hsa-miR-105 0 0 1
chr16:66577641|66577842 hsa-miR-7 0 0 1
chr16:66577641|66577842 hsa-miR-1285 0 0 1
chr16:66577641|66577842 hsa-miR-760 1 0 0
chr16:66577641|66577842 hsa-miR-548q 1 0 0
chr16:66577641|66577842 hsa-miR-3122 1 1 0
chr16:66577641|66577842 hsa-miR-4298 1 0 0
chr16:66577641|66577842 hsa-miR-4425 1 1 0
chr16:66577641|66577842 hsa-miR-4463 1 1 0
chr16:66577641|66577842 hsa-miR-4505 1 0 0
chr16:66577641|66577842 hsa-miR-4538 1 0 0
chr16:66577641|66577842 hsa-miR-5691 0 1 0
chr16:66577641|66577842 hsa-miR-5787 1 0 0
chr16:66577641|66577842 hsa-miR-8052 1 0 0
chr16:66577641|66577842 hsa-miR-4433b-3p 1 0 0
chr16:66577641|66577842 hsa-miR-4433a-3p 1 0 0
chr16:66577641|66577842 hsa-miR-3150a-3p 1 0 0
chr16:66577641|66577842 hsa-miR-6833-5p 1 0 0
chr16:66577641|66577842 hsa-miR-3934-5p 0 1 0
chr16:66577641|66577842 hsa-miR-7847-3p 1 0 0
chr16:66577641|66577842 hsa-miR-4653-3p 1 0 0
chr16:66577641|66577842 hsa-miR-432-5p 1 0 0
chr16:66577641|66577842 hsa-miR-3151-5p 1 0 0
chr16:66577641|66577842 hsa-miR-6732-5p 0 1 0
chr16:66577641|66577842 hsa-miR-6798-5p 0 1 0
chr16:66577641|66577842 hsa-miR-3130-3p 0 1 0
chr16:66577641|66577842 hsa-miR-6810-5p 1 0 0
chr16:66577641|66577842 hsa-miR-5088-5p 1 0 0
chr16:66577641|66577842 hsa-miR-204-3p 1 0 0
chr16:66577641|66577842 hsa-miR-4640-5p 1 0 0
chr16:66577641|66577842 hsa-miR-1908-5p 1 0 0
chr16:66577641|66577842 hsa-miR-4713-3p 1 0 0
chr16:66577641|66577842 hsa-miR-6781-5p 1 0 0
chr16:66577641|66577842 hsa-miR-675-3p 0 1 0
chr16:66577641|66577842 hsa-miR-6893-5p 1 0 0
chr16:66577641|66577842 hsa-miR-6779-5p 0 1 0
chr16:66577641|66577842 hsa-miR-6780a-5p 0 1 0
chr16:66577641|66577842 hsa-miR-6808-5p 1 0 0
chr16:66577641|66577842 hsa-miR-4728-5p 0 1 0
chr16:66577641|66577842 hsa-miR-5189-5p 1 0 0
chr16:66577641|66577842 hsa-miR-4726-5p 1 0 0
chr16:66577641|66577842 hsa-miR-4749-5p 1 0 0
chr16:66577641|66577842 hsa-miR-365a-5p 1 0 0
chr16:66577641|66577842 hsa-miR-365b-5p 1 0 0
chr16:66577641|66577842 hsa-miR-30c-1-3p 1 0 0
chr16:66577641|66577842 hsa-miR-4646-5p 1 0 0
chr16:66577641|66577842 hsa-miR-6766-5p 1 0 0
chr16:66577641|66577842 hsa-miR-302c-3p 0 1 0
chr16:66577641|66577842 hsa-miR-6724-5p 1 0 0
chr16:66577641|66577842 hsa-miR-6859-5p 1 0 0
chr16:66577641|66577842 hsa-miR-373-3p 1 0 0
chr16:66577641|66577842 hsa-miR-514b-5p 1 0 0
chr16:66577641|66577842 hsa-miR-301a-5p 0 1 0
chr16:66577641|66577842 hsa-miR-3616-5p 0 1 0
chr16:66577641|66577842 hsa-miR-371b-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:66577641|66577842
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MWPRARYLTSVPISVQMRVVKIKSECALLGAGHILGTSTCGSF
Nucleotide Sequence TTGTGGCCCAGAGCAAGGTATTTAACCTCAGTTCCTATATCTGTACAAATGAGAGTTGTAAAGATTAAGTCAGAGTGTGCCCTGCTTGGTGCAGGGCATATACTGGGCACTTCAACATGTGGCAGTTTC
CircID chr16:66577641|66577842
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MPHVEVPSICPAPSRAHSDLIFTTLICTDIGTEVKYLALGHKTGTNWDSKEMADQMLGRFRGLGGE
Nucleotide Sequence CTGCCACATGTTGAAGTGCCCAGTATATGCCCTGCACCAAGCAGGGCACACTCTGACTTAATCTTTACAACTCTCATTTGTACAGATATAGGAACTGAGGTTAAATACCTTGCTCTGGGCCACAAGACTGGGACAAATTGGGACTCAAAAGAAATGGCAGATCAAATGCTTGGAAGATTCAGGGGGTTGGGAGGGGAG
CircID chr16:66577641|66577842
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MRLNTLLWATRLGQIGTQKKWQIKCLEDSGGWEG
Nucleotide Sequence CTGAGGTTAAATACCTTGCTCTGGGCCACAAGACTGGGACAAATTGGGACTCAAAAGAAATGGCAGATCAAATGCTTGGAAGATTCAGGGGGTTGGGAGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab