CircRNA Information

General Information
circRNA Basic Information
CircID chr16:66889461|66889640
Strand -
CircType exon
Host Gene ENSG00000172840.5;
Algorism CIRI2;
Sequence CGCTAATTTTTTGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGCGAACTCCTGAGCTCAAGTGATCCTCCCACCTCAGCTTCCCAAAGTGCTAGCATTACAGGCATGAGCCACCACACCTCACCAGATTTTTAAAAAATATATAACTGCATCTCTCTTGATTCTGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:66889461|66889640 hsa-miR-155-5p 0 0 1
chr16:66889461|66889640 hsa-miR-155-3p 0 0 1
chr16:66889461|66889640 hsa-miR-335-5p 0 0 1
chr16:66889461|66889640 hsa-miR-335-3p 0 0 1
chr16:66889461|66889640 hsa-miR-593-5p 0 0 1
chr16:66889461|66889640 hsa-miR-593-3p 0 0 1
chr16:66889461|66889640 hsa-miR-621 0 0 1
chr16:66889461|66889640 hsa-miR-1294 0 0 1
chr16:66889461|66889640 hsa-miR-548c-3p 0 0 1
chr16:66889461|66889640 hsa-miR-24 0 0 1
chr16:66889461|66889640 hsa-miR-608 1 0 0
chr16:66889461|66889640 hsa-miR-1268a 1 0 0
chr16:66889461|66889640 hsa-miR-4306 1 0 0
chr16:66889461|66889640 hsa-miR-1268b 1 0 0
chr16:66889461|66889640 hsa-miR-4429 0 1 0
chr16:66889461|66889640 hsa-miR-4651 1 0 0
chr16:66889461|66889640 hsa-miR-4674 1 0 0
chr16:66889461|66889640 hsa-miR-4682 1 0 0
chr16:66889461|66889640 hsa-miR-4689 1 0 0
chr16:66889461|66889640 hsa-miR-4710 1 1 0
chr16:66889461|66889640 hsa-miR-4739 1 0 0
chr16:66889461|66889640 hsa-miR-6134 0 1 0
chr16:66889461|66889640 hsa-miR-9986 1 1 0
chr16:66889461|66889640 hsa-miR-6747-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6765-5p 1 0 0
chr16:66889461|66889640 hsa-miR-671-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6825-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6894-5p 1 1 0
chr16:66889461|66889640 hsa-miR-6854-5p 0 1 0
chr16:66889461|66889640 hsa-miR-6799-5p 1 0 0
chr16:66889461|66889640 hsa-miR-3192-5p 1 0 0
chr16:66889461|66889640 hsa-miR-7160-5p 1 1 0
chr16:66889461|66889640 hsa-miR-6772-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6782-5p 1 0 0
chr16:66889461|66889640 hsa-miR-3934-3p 0 1 0
chr16:66889461|66889640 hsa-miR-185-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6802-5p 1 0 0
chr16:66889461|66889640 hsa-miR-7162-3p 0 1 0
chr16:66889461|66889640 hsa-miR-20b-3p 0 1 0
chr16:66889461|66889640 hsa-miR-3664-3p 0 1 0
chr16:66889461|66889640 hsa-miR-3664-5p 0 1 0
chr16:66889461|66889640 hsa-miR-1233-5p 1 1 0
chr16:66889461|66889640 hsa-miR-1273h-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6778-5p 1 1 0
chr16:66889461|66889640 hsa-miR-6812-5p 1 0 0
chr16:66889461|66889640 hsa-miR-1343-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6726-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6743-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6752-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6756-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6819-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6851-5p 1 0 0
chr16:66889461|66889640 hsa-miR-11181-3p 1 0 0
chr16:66889461|66889640 hsa-miR-1249-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6722-3p 1 0 0
chr16:66889461|66889640 hsa-miR-6763-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6779-5p 1 1 0
chr16:66889461|66889640 hsa-miR-6780a-5p 1 0 0
chr16:66889461|66889640 hsa-miR-4728-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6795-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6883-5p 1 0 0
chr16:66889461|66889640 hsa-miR-939-5p 1 1 0
chr16:66889461|66889640 hsa-miR-6511b-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6856-5p 1 1 0
chr16:66889461|66889640 hsa-miR-4646-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6766-5p 1 0 0
chr16:66889461|66889640 hsa-miR-6785-5p 1 0 0
chr16:66889461|66889640 hsa-miR-320a-3p 0 1 0
chr16:66889461|66889640 hsa-miR-320b 0 1 0
chr16:66889461|66889640 hsa-miR-320c 0 1 0
chr16:66889461|66889640 hsa-miR-520e-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:66889461|66889640
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MSSSDPPTSASQSASITGMSHHTSPDF
Nucleotide Sequence CTGAGCTCAAGTGATCCTCCCACCTCAGCTTCCCAAAGTGCTAGCATTACAGGCATGAGCCACCACACCTCACCAGATTTTTAA
CircID chr16:66889461|66889640
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MPVMLALWEAEVGGSLELRSSQPGQHGETLSLLKIQKIS
Nucleotide Sequence ATGCCTGTAATGCTAGCACTTTGGGAAGCTGAGGTGGGAGGATCACTTGAGCTCAGGAGTTCGCAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab