CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67201388|67201600
Strand -
CircType exon
Host Gene ENSG00000102890.13;
Algorism CIRI2;
Sequence ATGCTTGACTATCTTTGGCAGAGGAACCTTCGCCAGTTCATCTATAAGGTAGGAAGTGGTGGGCCAGGGGGACCTCTCTGCCCCTCCCTCCCCGTGAGCCCTCGCTTACACCAGGGACTGGCTGTCCTGCAGAACATCATCCACAGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTACGTACTGCAGGCTCTCATGCTGGGGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67201388|67201600 hsa-miR-552-5p 0 0 1
chr16:67201388|67201600 hsa-miR-552-3p 0 0 1
chr16:67201388|67201600 hsa-miR-575 0 0 1
chr16:67201388|67201600 hsa-miR-596 0 0 1
chr16:67201388|67201600 hsa-miR-1181 0 0 1
chr16:67201388|67201600 hsa-miR-1205 0 0 1
chr16:67201388|67201600 hsa-miR-1286 0 0 1
chr16:67201388|67201600 hsa-miR-1255a 0 0 1
chr16:67201388|67201600 hsa-miR-1321 0 0 1
chr16:67201388|67201600 hsa-miR-125a-3p 0 0 1
chr16:67201388|67201600 hsa-miR-486-3p 0 0 1
chr16:67201388|67201600 hsa-miR-1184 0 0 1
chr16:67201388|67201600 hsa-miR-423-5p 0 1 1
chr16:67201388|67201600 hsa-miR-331-3p 0 1 1
chr16:67201388|67201600 hsa-miR-338-3p 0 1 1
chr16:67201388|67201600 hsa-miR-1255b 0 0 1
chr16:67201388|67201600 hsa-miR-544 0 0 1
chr16:67201388|67201600 hsa-miR-544a 0 1 0
chr16:67201388|67201600 hsa-miR-638 1 0 0
chr16:67201388|67201600 hsa-miR-4326 0 1 0
chr16:67201388|67201600 hsa-miR-4436a 0 1 0
chr16:67201388|67201600 hsa-miR-4437 0 1 0
chr16:67201388|67201600 hsa-miR-4688 1 1 0
chr16:67201388|67201600 hsa-miR-4706 1 1 0
chr16:67201388|67201600 hsa-miR-4721 0 1 0
chr16:67201388|67201600 hsa-miR-4739 1 1 0
chr16:67201388|67201600 hsa-miR-6090 1 0 0
chr16:67201388|67201600 hsa-miR-6127 1 1 0
chr16:67201388|67201600 hsa-miR-6133 0 1 0
chr16:67201388|67201600 hsa-miR-7978 0 1 0
chr16:67201388|67201600 hsa-miR-12127 0 1 0
chr16:67201388|67201600 hsa-miR-6825-5p 0 1 0
chr16:67201388|67201600 hsa-miR-7114-5p 0 1 0
chr16:67201388|67201600 hsa-miR-874-5p 1 0 0
chr16:67201388|67201600 hsa-miR-4793-3p 0 1 0
chr16:67201388|67201600 hsa-miR-4436b-5p 1 0 0
chr16:67201388|67201600 hsa-miR-5088-5p 0 1 0
chr16:67201388|67201600 hsa-miR-1226-5p 1 1 0
chr16:67201388|67201600 hsa-miR-4707-3p 1 0 0
chr16:67201388|67201600 hsa-miR-3691-5p 0 1 0
chr16:67201388|67201600 hsa-miR-7113-3p 0 1 0
chr16:67201388|67201600 hsa-miR-6516-5p 1 1 0
chr16:67201388|67201600 hsa-miR-149-3p 0 1 0
chr16:67201388|67201600 hsa-miR-2114-5p 0 1 0
chr16:67201388|67201600 hsa-miR-4712-3p 0 1 0
chr16:67201388|67201600 hsa-miR-6812-5p 1 0 0
chr16:67201388|67201600 hsa-miR-6816-5p 1 1 0
chr16:67201388|67201600 hsa-miR-6743-5p 1 1 0
chr16:67201388|67201600 hsa-miR-6756-5p 1 0 0
chr16:67201388|67201600 hsa-miR-1249-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6779-5p 1 0 0
chr16:67201388|67201600 hsa-miR-6797-5p 1 1 0
chr16:67201388|67201600 hsa-miR-4728-5p 0 1 0
chr16:67201388|67201600 hsa-miR-328-5p 1 1 0
chr16:67201388|67201600 hsa-miR-4685-5p 1 0 0
chr16:67201388|67201600 hsa-miR-6777-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6795-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6846-5p 1 0 0
chr16:67201388|67201600 hsa-miR-6883-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6887-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6889-5p 0 1 0
chr16:67201388|67201600 hsa-miR-7843-5p 0 1 0
chr16:67201388|67201600 hsa-miR-6785-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67201388|67201600
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MLDYLWQRNLRQFIYKVGSGGPGGPLCPSLPVSPRLHQGLAVLQNIIHSAAPMGDEMAHHLYVLQALMLGL
Nucleotide Sequence ATGCTTGACTATCTTTGGCAGAGGAACCTTCGCCAGTTCATCTATAAGGTAGGAAGTGGTGGGCCAGGGGGACCTCTCTGCCCCTCCCTCCCCGTGAGCCCTCGCTTACACCAGGGACTGGCTGTCCTGCAGAACATCATCCACAGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTACGTACTGCAGGCTCTCATGCTGGGGCTG
CircID chr16:67201388|67201600
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MSCRTSSTVQHQWATRWLITCTYCRLSCWG
Nucleotide Sequence CTGTCCTGCAGAACATCATCCACAGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTACGTACTGCAGGCTCTCATGCTGGGGC
CircID chr16:67201388|67201600
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MPLPPREPSLTPGTGCPAEHHPQCSTNGRRDGSSPVRTAGSHAGA
Nucleotide Sequence CTGCCCCTCCCTCCCCGTGAGCCCTCGCTTACACCAGGGACTGGCTGTCCTGCAGAACATCATCCACAGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTACGTACTGCAGGCTCTCATGCTGGGGCT
CircID chr16:67201388|67201600
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MQYVQVMSHLVAHWCCTVDDVLQDSQSLV
Nucleotide Sequence CTGCAGTACGTACAGGTGATGAGCCATCTCGTCGCCCATTGGTGCTGCACTGTGGATGATGTTCTGCAGGACAGCCAGTCCCTGGTGTAA
CircID chr16:67201388|67201600
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MWMMFCRTASPWCKRGLTGREGQRGPPGPPLPTL
Nucleotide Sequence CTGTGGATGATGTTCTGCAGGACAGCCAGTCCCTGGTGTAAGCGAGGGCTCACGGGGAGGGAGGGGCAGAGAGGTCCCCCTGGCCCACCACTTCCTACCTTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab