CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67228807|67229106
Strand +
CircType exon
Host Gene ENSG00000168701.17;
Algorism CIRI2;
Sequence CGCTTCATCTGCCGCCGCTCCTGTCGGCGCTGCCGTTTCTCATTGTGCTCTGGTGCTGGGGTGCCACTGTCTGCAGTGAACCAGGGGCCCAGCACATTCACCCACAGGAGGTAAAGGGCCCGGCCTGGAGCCTACAAGAGAAACGGTAACTTGAAGCAAGATGCAGGGAATAAAAGATGGGGAGGGTTAGATGCCCCTTCTTGGGAGCGCCCCCAGCCCACATACCAGAAGCCAGAAGGACCAGACATAGAGAGAGAAGCAGCTGAGCACCTGCACGATGGCTGTCAGTAGGATCACATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67228807|67229106 hsa-miR-26b-5p 0 0 1
chr16:67228807|67229106 hsa-miR-26b-3p 0 0 1
chr16:67228807|67229106 hsa-miR-29a-5p 0 0 1
chr16:67228807|67229106 hsa-miR-29a-3p 0 0 1
chr16:67228807|67229106 hsa-miR-149-5p 0 0 1
chr16:67228807|67229106 hsa-miR-149-3p 0 0 1
chr16:67228807|67229106 hsa-miR-150-5p 0 0 1
chr16:67228807|67229106 hsa-miR-150-3p 0 0 1
chr16:67228807|67229106 hsa-miR-29c-5p 0 0 1
chr16:67228807|67229106 hsa-miR-29c-3p 0 0 1
chr16:67228807|67229106 hsa-miR-517-5p 0 0 1
chr16:67228807|67229106 hsa-miR-517a-3p 0 0 1
chr16:67228807|67229106 hsa-miR-517b-3p 0 0 1
chr16:67228807|67229106 hsa-miR-517c-3p 0 0 1
chr16:67228807|67229106 hsa-miR-539-5p 0 0 1
chr16:67228807|67229106 hsa-miR-539-3p 0 0 1
chr16:67228807|67229106 hsa-miR-637 0 1 1
chr16:67228807|67229106 hsa-miR-643 0 0 1
chr16:67228807|67229106 hsa-miR-657 1 0 1
chr16:67228807|67229106 hsa-miR-942-5p 0 0 1
chr16:67228807|67229106 hsa-miR-942-3p 0 0 1
chr16:67228807|67229106 hsa-miR-1231 0 0 1
chr16:67228807|67229106 hsa-miR-1237-5p 0 0 1
chr16:67228807|67229106 hsa-miR-1237-3p 0 0 1
chr16:67228807|67229106 hsa-miR-1297 0 0 1
chr16:67228807|67229106 hsa-miR-1248 0 0 1
chr16:67228807|67229106 hsa-miR-1257 0 1 1
chr16:67228807|67229106 hsa-miR-1262 0 1 1
chr16:67228807|67229106 hsa-miR-1324 0 1 1
chr16:67228807|67229106 hsa-miR-296-5p 0 0 1
chr16:67228807|67229106 hsa-miR-885-3p 0 1 1
chr16:67228807|67229106 hsa-miR-299-3p 0 1 1
chr16:67228807|67229106 hsa-miR-1207-3p 0 0 1
chr16:67228807|67229106 hsa-miR-331-3p 0 0 1
chr16:67228807|67229106 hsa-miR-654-3p 0 0 1
chr16:67228807|67229106 hsa-miR-509-3-5p 0 1 1
chr16:67228807|67229106 hsa-miR-509-5p 1 1 1
chr16:67228807|67229106 hsa-miR-1274a 0 0 1
chr16:67228807|67229106 hsa-miR-26a 0 0 1
chr16:67228807|67229106 hsa-miR-768-3p 0 0 1
chr16:67228807|67229106 hsa-miR-29b 0 0 1
chr16:67228807|67229106 hsa-miR-623 1 0 0
chr16:67228807|67229106 hsa-miR-762 0 1 0
chr16:67228807|67229106 hsa-miR-764 1 1 0
chr16:67228807|67229106 hsa-miR-1263 0 1 0
chr16:67228807|67229106 hsa-miR-3166 0 1 0
chr16:67228807|67229106 hsa-miR-4296 0 1 0
chr16:67228807|67229106 hsa-miR-4322 0 1 0
chr16:67228807|67229106 hsa-miR-4265 0 1 0
chr16:67228807|67229106 hsa-miR-4289 1 1 0
chr16:67228807|67229106 hsa-miR-3665 1 1 0
chr16:67228807|67229106 hsa-miR-3907 1 1 0
chr16:67228807|67229106 hsa-miR-4469 1 0 0
chr16:67228807|67229106 hsa-miR-4492 0 1 0
chr16:67228807|67229106 hsa-miR-4526 0 1 0
chr16:67228807|67229106 hsa-miR-1587 0 1 0
chr16:67228807|67229106 hsa-miR-3960 1 1 0
chr16:67228807|67229106 hsa-miR-4767 1 0 0
chr16:67228807|67229106 hsa-miR-5787 0 1 0
chr16:67228807|67229106 hsa-miR-6090 1 0 0
chr16:67228807|67229106 hsa-miR-8072 0 1 0
chr16:67228807|67229106 hsa-miR-103a-2-5p 1 0 0
chr16:67228807|67229106 hsa-miR-143-5p 1 0 0
chr16:67228807|67229106 hsa-miR-4433b-3p 1 0 0
chr16:67228807|67229106 hsa-miR-4731-5p 0 1 0
chr16:67228807|67229106 hsa-miR-3194-3p 1 0 0
chr16:67228807|67229106 hsa-miR-1273h-3p 0 1 0
chr16:67228807|67229106 hsa-miR-4433a-3p 1 0 0
chr16:67228807|67229106 hsa-miR-6836-3p 1 0 0
chr16:67228807|67229106 hsa-miR-210-5p 0 1 0
chr16:67228807|67229106 hsa-miR-27a-5p 1 0 0
chr16:67228807|67229106 hsa-miR-3663-3p 1 0 0
chr16:67228807|67229106 hsa-miR-7114-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6089 1 0 0
chr16:67228807|67229106 hsa-miR-6820-5p 0 1 0
chr16:67228807|67229106 hsa-miR-874-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6762-3p 1 0 0
chr16:67228807|67229106 hsa-miR-4474-3p 1 0 0
chr16:67228807|67229106 hsa-miR-6842-3p 1 0 0
chr16:67228807|67229106 hsa-miR-6806-5p 1 1 0
chr16:67228807|67229106 hsa-miR-200b-5p 0 1 0
chr16:67228807|67229106 hsa-miR-6873-3p 1 1 0
chr16:67228807|67229106 hsa-miR-6787-3p 1 1 0
chr16:67228807|67229106 hsa-miR-1915-5p 1 0 0
chr16:67228807|67229106 hsa-miR-3663-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6748-5p 0 1 0
chr16:67228807|67229106 hsa-miR-6868-3p 0 1 0
chr16:67228807|67229106 hsa-miR-6829-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6882-3p 1 0 0
chr16:67228807|67229106 hsa-miR-939-3p 1 0 0
chr16:67228807|67229106 hsa-miR-6753-5p 1 0 0
chr16:67228807|67229106 hsa-miR-296-3p 1 0 0
chr16:67228807|67229106 hsa-miR-3677-3p 1 0 0
chr16:67228807|67229106 hsa-miR-4743-3p 1 0 0
chr16:67228807|67229106 hsa-miR-3158-5p 0 1 0
chr16:67228807|67229106 hsa-miR-3065-3p 0 1 0
chr16:67228807|67229106 hsa-miR-7152-3p 1 0 0
chr16:67228807|67229106 hsa-miR-660-3p 0 1 0
chr16:67228807|67229106 hsa-miR-6720-3p 1 0 0
chr16:67228807|67229106 hsa-miR-597-3p 1 1 0
chr16:67228807|67229106 hsa-miR-4774-5p 0 1 0
chr16:67228807|67229106 hsa-miR-671-3p 1 0 0
chr16:67228807|67229106 hsa-miR-6501-3p 0 1 0
chr16:67228807|67229106 hsa-miR-2277-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6851-3p 0 1 0
chr16:67228807|67229106 hsa-miR-4750-3p 1 0 0
chr16:67228807|67229106 hsa-miR-3179 0 1 0
chr16:67228807|67229106 hsa-miR-888-3p 0 1 0
chr16:67228807|67229106 hsa-miR-10400-5p 1 0 0
chr16:67228807|67229106 hsa-miR-1343-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6752-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6803-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6751-5p 1 0 0
chr16:67228807|67229106 hsa-miR-320a-5p 1 0 0
chr16:67228807|67229106 hsa-miR-1915-3p 1 0 0
chr16:67228807|67229106 hsa-miR-3620-5p 1 1 0
chr16:67228807|67229106 hsa-miR-4728-5p 1 0 0
chr16:67228807|67229106 hsa-miR-5189-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6836-5p 1 0 0
chr16:67228807|67229106 hsa-miR-10392-5p 1 0 0
chr16:67228807|67229106 hsa-miR-10396b-5p 1 0 0
chr16:67228807|67229106 hsa-miR-1909-3p 1 0 0
chr16:67228807|67229106 hsa-miR-449c-5p 1 0 0
chr16:67228807|67229106 hsa-miR-4632-5p 1 0 0
chr16:67228807|67229106 hsa-miR-4685-5p 1 0 0
chr16:67228807|67229106 hsa-miR-4701-3p 0 1 0
chr16:67228807|67229106 hsa-miR-4726-5p 1 0 0
chr16:67228807|67229106 hsa-miR-4697-5p 0 1 0
chr16:67228807|67229106 hsa-miR-3940-5p 1 1 0
chr16:67228807|67229106 hsa-miR-498-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6724-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6791-5p 1 0 0
chr16:67228807|67229106 hsa-miR-6775-3p 1 0 0
chr16:67228807|67229106 hsa-miR-9851-3p 1 0 0
chr16:67228807|67229106 hsa-miR-4768-5p 1 1 0
chr16:67228807|67229106 hsa-miR-513c-5p 0 1 0
chr16:67228807|67229106 hsa-miR-26a-5p 1 0 0
chr16:67228807|67229106 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67228807|67229106
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MKQDAGNKRWGGLDAPSWERPQPTYQKPEGPDIEREAAEHLHDGCQ
Nucleotide Sequence TTGAAGCAAGATGCAGGGAATAAAAGATGGGGAGGGTTAGATGCCCCTTCTTGGGAGCGCCCCCAGCCCACATACCAGAAGCCAGAAGGACCAGACATAGAGAGAGAAGCAGCTGAGCACCTGCACGATGGCTGTCAGTAG
CircID chr16:67228807|67229106
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MPPLLSALPFLIVLWCWGATVCSEPGAQHIHPQEVKGPAWSLQEKR
Nucleotide Sequence CTGCCGCCGCTCCTGTCGGCGCTGCCGTTTCTCATTGTGCTCTGGTGCTGGGGTGCCACTGTCTGCAGTGAACCAGGGGCCCAGCACATTCACCCACAGGAGGTAAAGGGCCCGGCCTGGAGCCTACAAGAGAAACGGTAA
CircID chr16:67228807|67229106
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRVRCPFLGAPPAHIPEARRTRHRERSS
Nucleotide Sequence ATGGGGAGGGTTAGATGCCCCTTCTTGGGAGCGCCCCCAGCCCACATACCAGAAGCCAGAAGGACCAGACATAGAGAGAGAAGCAGCTGA
CircID chr16:67228807|67229106
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MTAIVQVLSCFSLYVWSFWLLVCGLGALPRRGI
Nucleotide Sequence CTGACAGCCATCGTGCAGGTGCTCAGCTGCTTCTCTCTCTATGTCTGGTCCTTCTGGCTTCTGGTATGTGGGCTGGGGGCGCTCCCAAGAAGGGGCATCTAA
CircID chr16:67228807|67229106
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MLQVTVSLVGSRPGPLPPVGECAGPLVHCRQWHPSTRAQ
Nucleotide Sequence TTGCTTCAAGTTACCGTTTCTCTTGTAGGCTCCAGGCCGGGCCCTTTACCTCCTGTGGGTGAATGTGCTGGGCCCCTGGTTCACTGCAGACAGTGGCACCCCAGCACCAGAGCACAATGA
CircID chr16:67228807|67229106
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MSGPSGFWYVGWGRSQEGASNPPHLLFPASCFKLPFLL
Nucleotide Sequence ATGTCTGGTCCTTCTGGCTTCTGGTATGTGGGCTGGGGGCGCTCCCAAGAAGGGGCATCTAACCCTCCCCATCTTTTATTCCCTGCATCTTGCTTCAAGTTACCGTTTCTCTTGTAG
CircID chr16:67228807|67229106
ORF Type ORF7
Protein Length 35
Nucleotide Length 105
Protein Sequence MWVNVLGPWFTADSGTPAPEHNEKRQRRQERRQMK
Nucleotide Sequence CTGTGGGTGAATGTGCTGGGCCCCTGGTTCACTGCAGACAGTGGCACCCCAGCACCAGAGCACAATGAGAAACGGCAGCGCCGACAGGAGCGGCGGCAGATGAAG
CircID chr16:67228807|67229106
ORF Type ORF8
Protein Length 54
Nucleotide Length 165
Protein Sequence MLLSLCLVLLASGMWAGGAPKKGHLTLPIFYSLHLASSYRFSCRLQAGPFTSCG
Nucleotide Sequence CTGCTTCTCTCTCTATGTCTGGTCCTTCTGGCTTCTGGTATGTGGGCTGGGGGCGCTCCCAAGAAGGGGCATCTAACCCTCCCCATCTTTTATTCCCTGCATCTTGCTTCAAGTTACCGTTTCTCTTGTAGGCTCCAGGCCGGGCCCTTTACCTCCTGTGGGTGA
CircID chr16:67228807|67229106
ORF Type ORF9
Protein Length 30
Nucleotide Length 93
Protein Sequence MCWAPGSLQTVAPQHQSTMRNGSADRSGGR
Nucleotide Sequence ATGTGCTGGGCCCCTGGTTCACTGCAGACAGTGGCACCCCAGCACCAGAGCACAATGAGAAACGGCAGCGCCGACAGGAGCGGCGGCAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab