CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67239348|67239522
Strand -
CircType exon
Host Gene ENSG00000135723.12;
Algorism CIRI2;
Sequence CTGATCTCTTCATAGAAGCCCTCCAGCATCTCCCGCTGCTCTTCCAGGGACAGCTCGGTGTCCAGGTAGTATCCGGAGGGAGACACTTGCAGAGCACAATCCTCCAACTGGGGGCAAAGGGAACAGCTGTGAGACTGAGGAAGAGGTGGCAGGCGAATGTATGAAGACCCCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67239348|67239522 hsa-miR-181c-5p 0 0 1
chr16:67239348|67239522 hsa-miR-181c-3p 0 0 1
chr16:67239348|67239522 hsa-miR-204-5p 0 0 1
chr16:67239348|67239522 hsa-miR-204-3p 0 0 1
chr16:67239348|67239522 hsa-miR-211-5p 0 0 1
chr16:67239348|67239522 hsa-miR-211-3p 0 0 1
chr16:67239348|67239522 hsa-miR-181d-5p 0 0 1
chr16:67239348|67239522 hsa-miR-181d-3p 0 0 1
chr16:67239348|67239522 hsa-miR-503-5p 0 0 1
chr16:67239348|67239522 hsa-miR-503-3p 0 0 1
chr16:67239348|67239522 hsa-miR-619-5p 0 0 1
chr16:67239348|67239522 hsa-miR-619-3p 0 0 1
chr16:67239348|67239522 hsa-miR-622 0 0 1
chr16:67239348|67239522 hsa-miR-623 0 0 1
chr16:67239348|67239522 hsa-miR-765 0 0 1
chr16:67239348|67239522 hsa-miR-1236-5p 0 0 1
chr16:67239348|67239522 hsa-miR-1236-3p 0 0 1
chr16:67239348|67239522 hsa-miR-1287-5p 0 0 1
chr16:67239348|67239522 hsa-miR-1287-3p 0 0 1
chr16:67239348|67239522 hsa-miR-193a-5p 0 0 1
chr16:67239348|67239522 hsa-miR-361-3p 0 1 1
chr16:67239348|67239522 hsa-miR-485-3p 0 1 1
chr16:67239348|67239522 hsa-miR-342-3p 0 0 1
chr16:67239348|67239522 hsa-miR-7 0 0 1
chr16:67239348|67239522 hsa-miR-181a 0 0 1
chr16:67239348|67239522 hsa-miR-181b 0 0 1
chr16:67239348|67239522 hsa-miR-218 0 0 1
chr16:67239348|67239522 hsa-miR-768-5p 0 0 1
chr16:67239348|67239522 hsa-miR-596 1 0 0
chr16:67239348|67239522 hsa-miR-543 1 0 0
chr16:67239348|67239522 hsa-miR-2278 0 1 0
chr16:67239348|67239522 hsa-miR-4326 0 1 0
chr16:67239348|67239522 hsa-miR-3652 1 0 0
chr16:67239348|67239522 hsa-miR-4469 0 1 0
chr16:67239348|67239522 hsa-miR-3960 1 0 0
chr16:67239348|67239522 hsa-miR-4741 1 1 0
chr16:67239348|67239522 hsa-miR-5193 1 0 0
chr16:67239348|67239522 hsa-miR-7155-5p 1 0 0
chr16:67239348|67239522 hsa-miR-6836-3p 1 0 0
chr16:67239348|67239522 hsa-miR-6894-5p 0 1 0
chr16:67239348|67239522 hsa-miR-6799-5p 1 1 0
chr16:67239348|67239522 hsa-miR-6515-5p 1 1 0
chr16:67239348|67239522 hsa-miR-6746-5p 0 1 0
chr16:67239348|67239522 hsa-miR-4722-5p 1 0 0
chr16:67239348|67239522 hsa-miR-423-3p 1 0 0
chr16:67239348|67239522 hsa-miR-877-3p 1 1 0
chr16:67239348|67239522 hsa-miR-6798-5p 1 0 0
chr16:67239348|67239522 hsa-miR-5088-5p 1 0 0
chr16:67239348|67239522 hsa-miR-4763-5p 0 1 0
chr16:67239348|67239522 hsa-miR-6894-3p 1 1 0
chr16:67239348|67239522 hsa-miR-4715-3p 0 1 0
chr16:67239348|67239522 hsa-miR-885-3p 1 1 0
chr16:67239348|67239522 hsa-miR-4638-3p 0 1 0
chr16:67239348|67239522 hsa-miR-4446-5p 1 0 0
chr16:67239348|67239522 hsa-miR-3690 0 1 0
chr16:67239348|67239522 hsa-miR-2276-3p 0 1 0
chr16:67239348|67239522 hsa-miR-670-3p 0 1 0
chr16:67239348|67239522 hsa-miR-6513-3p 0 1 0
chr16:67239348|67239522 hsa-miR-501-5p 1 0 0
chr16:67239348|67239522 hsa-miR-1227-3p 1 0 0
chr16:67239348|67239522 hsa-miR-4727-5p 0 1 0
chr16:67239348|67239522 hsa-miR-4763-3p 1 0 0
chr16:67239348|67239522 hsa-miR-6775-5p 1 0 0
chr16:67239348|67239522 hsa-miR-1249-5p 1 0 0
chr16:67239348|67239522 hsa-miR-6722-3p 1 0 0
chr16:67239348|67239522 hsa-miR-6797-5p 1 0 0
chr16:67239348|67239522 hsa-miR-6879-5p 0 1 0
chr16:67239348|67239522 hsa-miR-328-5p 1 0 0
chr16:67239348|67239522 hsa-miR-4632-5p 1 1 0
chr16:67239348|67239522 hsa-miR-6846-5p 1 0 0
chr16:67239348|67239522 hsa-miR-6799-3p 1 0 0
chr16:67239348|67239522 hsa-miR-4722-3p 0 1 0
chr16:67239348|67239522 hsa-miR-6727-3p 1 1 0
chr16:67239348|67239522 hsa-miR-6848-3p 1 0 0
chr16:67239348|67239522 hsa-miR-5006-3p 0 1 0
chr16:67239348|67239522 hsa-miR-4769-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67239348|67239522
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MLFQGQLGVQVVSGGRHLQSTILQLGAKGTAVRLRKRWQANV
Nucleotide Sequence CTGCTCTTCCAGGGACAGCTCGGTGTCCAGGTAGTATCCGGAGGGAGACACTTGCAGAGCACAATCCTCCAACTGGGGGCAAAGGGAACAGCTGTGAGACTGAGGAAGAGGTGGCAGGCGAATGTATGA
CircID chr16:67239348|67239522
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MFPLPPVGGLCSASVSLRILPGHRAVPGRAAGDAGGLL
Nucleotide Sequence CTGTTCCCTTTGCCCCCAGTTGGAGGATTGTGCTCTGCAAGTGTCTCCCTCCGGATACTACCTGGACACCGAGCTGTCCCTGGAAGAGCAGCGGGAGATGCTGGAGGGCTTCTATGA
CircID chr16:67239348|67239522
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MPPLPQSHSCSLCPQLEDCALQVSPSGYYLDTELSLEEQREMLEGFYEEI
Nucleotide Sequence CTGCCACCTCTTCCTCAGTCTCACAGCTGTTCCCTTTGCCCCCAGTTGGAGGATTGTGCTCTGCAAGTGTCTCCCTCCGGATACTACCTGGACACCGAGCTGTCCCTGGAAGAGCAGCGGGAGATGCTGGAGGGCTTCTATGAAGAGATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab