CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67288917|67289149
Strand -
CircType exon
Host Gene ENSG00000196155.11;
Algorism CIRI2;
Sequence CTACATGTGCAACGCTGTTGACTACCCTTTCTGATGTGTGTGGCCATTGGACTAACTGGCACGGGGCCTCTCTAGGGAAGTCTGGTTGTAGAGCCTGAATAGGCTCCTGGCCCCATGACCCCTTCTCCTGTCCCCAGCTCCCATCCCAGTTGTGGGTTAAGAATAGGCTAGAGCAGACATTGGGTGTTTCCATGCTGTAGGCTGGTGGGGGACCATGTGCCTCTAGGCAGTGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67288917|67289149 hsa-miR-346 0 0 1
chr16:67288917|67289149 hsa-miR-484 0 0 1
chr16:67288917|67289149 hsa-miR-505-5p 0 0 1
chr16:67288917|67289149 hsa-miR-505-3p 0 0 1
chr16:67288917|67289149 hsa-miR-588 0 1 1
chr16:67288917|67289149 hsa-miR-617 0 1 1
chr16:67288917|67289149 hsa-miR-632 0 1 1
chr16:67288917|67289149 hsa-miR-421 0 0 1
chr16:67288917|67289149 hsa-miR-665 1 1 1
chr16:67288917|67289149 hsa-miR-920 0 1 1
chr16:67288917|67289149 hsa-miR-1226-5p 0 0 1
chr16:67288917|67289149 hsa-miR-1226-3p 0 0 1
chr16:67288917|67289149 hsa-miR-1251-5p 0 0 1
chr16:67288917|67289149 hsa-miR-1251-3p 0 0 1
chr16:67288917|67289149 hsa-miR-1283 0 0 1
chr16:67288917|67289149 hsa-miR-361-3p 0 0 1
chr16:67288917|67289149 hsa-miR-654-3p 0 0 1
chr16:67288917|67289149 hsa-miR-767-3p 0 0 1
chr16:67288917|67289149 hsa-miR-1308 0 0 1
chr16:67288917|67289149 hsa-miR-608 1 0 0
chr16:67288917|67289149 hsa-miR-637 1 0 0
chr16:67288917|67289149 hsa-miR-762 1 0 0
chr16:67288917|67289149 hsa-miR-3137 1 0 0
chr16:67288917|67289149 hsa-miR-3147 1 0 0
chr16:67288917|67289149 hsa-miR-3154 1 1 0
chr16:67288917|67289149 hsa-miR-3155a 0 1 0
chr16:67288917|67289149 hsa-miR-4298 1 1 0
chr16:67288917|67289149 hsa-miR-4300 0 1 0
chr16:67288917|67289149 hsa-miR-4259 1 0 0
chr16:67288917|67289149 hsa-miR-3936 0 1 0
chr16:67288917|67289149 hsa-miR-4428 0 1 0
chr16:67288917|67289149 hsa-miR-4463 1 0 0
chr16:67288917|67289149 hsa-miR-3155b 0 1 0
chr16:67288917|67289149 hsa-miR-4507 1 0 0
chr16:67288917|67289149 hsa-miR-4516 0 1 0
chr16:67288917|67289149 hsa-miR-4651 1 0 0
chr16:67288917|67289149 hsa-miR-4656 1 0 0
chr16:67288917|67289149 hsa-miR-5681a 0 1 0
chr16:67288917|67289149 hsa-miR-5787 1 0 0
chr16:67288917|67289149 hsa-miR-6090 1 0 0
chr16:67288917|67289149 hsa-miR-8089 1 1 0
chr16:67288917|67289149 hsa-miR-223-3p 0 1 0
chr16:67288917|67289149 hsa-miR-4731-5p 1 1 0
chr16:67288917|67289149 hsa-miR-4433a-3p 1 0 0
chr16:67288917|67289149 hsa-miR-6857-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6822-3p 0 1 0
chr16:67288917|67289149 hsa-miR-6728-5p 1 1 0
chr16:67288917|67289149 hsa-miR-1227-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6757-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6746-5p 1 0 0
chr16:67288917|67289149 hsa-miR-874-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6741-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6727-5p 1 0 0
chr16:67288917|67289149 hsa-miR-7845-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6871-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6782-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6810-5p 1 1 0
chr16:67288917|67289149 hsa-miR-5008-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6882-3p 1 0 0
chr16:67288917|67289149 hsa-miR-6740-5p 1 0 0
chr16:67288917|67289149 hsa-miR-4640-5p 0 1 0
chr16:67288917|67289149 hsa-miR-92b-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6828-3p 0 1 0
chr16:67288917|67289149 hsa-miR-5589-3p 0 1 0
chr16:67288917|67289149 hsa-miR-6755-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6890-3p 0 1 0
chr16:67288917|67289149 hsa-miR-26a-1-3p 0 1 0
chr16:67288917|67289149 hsa-miR-6769b-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6778-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6812-5p 1 1 0
chr16:67288917|67289149 hsa-miR-6726-5p 1 1 0
chr16:67288917|67289149 hsa-miR-6743-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6756-5p 1 1 0
chr16:67288917|67289149 hsa-miR-6819-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6722-3p 1 0 0
chr16:67288917|67289149 hsa-miR-3620-5p 1 0 0
chr16:67288917|67289149 hsa-miR-5196-5p 1 0 0
chr16:67288917|67289149 hsa-miR-328-5p 1 0 0
chr16:67288917|67289149 hsa-miR-4649-5p 1 0 0
chr16:67288917|67289149 hsa-miR-4726-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6846-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6848-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6845-5p 0 1 0
chr16:67288917|67289149 hsa-miR-939-5p 1 0 0
chr16:67288917|67289149 hsa-miR-6856-5p 0 1 0
chr16:67288917|67289149 hsa-miR-4700-5p 0 1 0
chr16:67288917|67289149 hsa-miR-4646-5p 1 0 0
chr16:67288917|67289149 hsa-miR-4667-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6762-5p 0 1 0
chr16:67288917|67289149 hsa-miR-10392-3p 1 0 0
chr16:67288917|67289149 hsa-miR-4701-5p 0 1 0
chr16:67288917|67289149 hsa-miR-455-3p 0 1 0
chr16:67288917|67289149 hsa-miR-6506-5p 0 1 0
chr16:67288917|67289149 hsa-miR-6502-5p 0 1 0
chr16:67288917|67289149 hsa-miR-26a-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:67288917|67289149
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLTTLSDVCGHWTNWHGASLGKSGCRA
Nucleotide Sequence CTGTTGACTACCCTTTCTGATGTGTGTGGCCATTGGACTAACTGGCACGGGGCCTCTCTAGGGAAGTCTGGTTGTAGAGCCTGA
CircID chr16:67288917|67289149
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGWELGTGEGVMGPGAYSGSTTRLP
Nucleotide Sequence CTGGGATGGGAGCTGGGGACAGGAGAAGGGGTCATGGGGCCAGGAGCCTATTCAGGCTCTACAACCAGACTTCCCTAG
CircID chr16:67288917|67289149
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence METPNVCSSLFLTHNWDGSWGQEKGSWGQEPIQALQPDFPREAPCQLVQWPHTSERVVNSVAHV
Nucleotide Sequence ATGGAAACACCCAATGTCTGCTCTAGCCTATTCTTAACCCACAACTGGGATGGGAGCTGGGGACAGGAGAAGGGGTCATGGGGCCAGGAGCCTATTCAGGCTCTACAACCAGACTTCCCTAGAGAGGCCCCGTGCCAGTTAGTCCAATGGCCACACACATCAGAAAGGGTAGTCAACAGCGTTGCACATGTA
CircID chr16:67288917|67289149
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGAGDRRRGHGARSLFRLYNQTSLERPRAS
Nucleotide Sequence ATGGGAGCTGGGGACAGGAGAAGGGGTCATGGGGCCAGGAGCCTATTCAGGCTCTACAACCAGACTTCCCTAGAGAGGCCCCGTGCCAGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab