CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67438608|67438842
Strand -
CircType exon
Host Gene ENSG00000159720.10;
Algorism CIRI2;
Sequence ACTCCTGCTCCTTGAGCTTCACGAAGGCATAGAAGACACCAAAGTGGAACTGGTTCAGGAAGGCCAACTTGTTCAGCTTTACCTGTGGACACGGGCAGATGTGGTGTCCAGGTGGCCATGGCCACAGAGTCAGGTCTAAACCACCAGGTTGGCCTCCCTCTGACAAGCAGACCCTGCAGACTCACCTCGTGCTCAAAGAATCGGTCCTCCAGCGTCTTGTCTCCAGGGTTGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67438608|67438842 hsa-miR-320a-5p 0 0 1
chr16:67438608|67438842 hsa-miR-320a-3p 0 0 1
chr16:67438608|67438842 hsa-miR-345-5p 0 0 1
chr16:67438608|67438842 hsa-miR-345-3p 0 0 1
chr16:67438608|67438842 hsa-miR-588 0 0 1
chr16:67438608|67438842 hsa-miR-619-5p 0 0 1
chr16:67438608|67438842 hsa-miR-619-3p 0 0 1
chr16:67438608|67438842 hsa-miR-627-5p 0 0 1
chr16:67438608|67438842 hsa-miR-627-3p 0 0 1
chr16:67438608|67438842 hsa-miR-765 0 0 1
chr16:67438608|67438842 hsa-miR-924 0 0 1
chr16:67438608|67438842 hsa-miR-1182 0 1 1
chr16:67438608|67438842 hsa-miR-1200 0 0 1
chr16:67438608|67438842 hsa-miR-663b 0 0 1
chr16:67438608|67438842 hsa-miR-1205 0 1 1
chr16:67438608|67438842 hsa-miR-1321 0 1 1
chr16:67438608|67438842 hsa-miR-127-5p 0 1 1
chr16:67438608|67438842 hsa-miR-1184 0 0 1
chr16:67438608|67438842 hsa-miR-490-3p 0 0 1
chr16:67438608|67438842 hsa-miR-532-5p 0 0 1
chr16:67438608|67438842 hsa-miR-876-3p 0 1 1
chr16:67438608|67438842 hsa-miR-299-5p 0 0 1
chr16:67438608|67438842 hsa-miR-324-3p 0 0 1
chr16:67438608|67438842 hsa-miR-320b 0 1 1
chr16:67438608|67438842 hsa-miR-320c 0 0 1
chr16:67438608|67438842 hsa-miR-320d 0 0 1
chr16:67438608|67438842 hsa-miR-323-5p 0 0 1
chr16:67438608|67438842 hsa-miR-9 0 0 1
chr16:67438608|67438842 hsa-miR-611 1 0 0
chr16:67438608|67438842 hsa-miR-637 1 0 0
chr16:67438608|67438842 hsa-miR-643 1 0 0
chr16:67438608|67438842 hsa-miR-760 1 0 0
chr16:67438608|67438842 hsa-miR-1248 0 1 0
chr16:67438608|67438842 hsa-miR-3142 0 1 0
chr16:67438608|67438842 hsa-miR-3652 1 0 0
chr16:67438608|67438842 hsa-miR-4430 1 0 0
chr16:67438608|67438842 hsa-miR-3135b 1 0 0
chr16:67438608|67438842 hsa-miR-4734 0 1 0
chr16:67438608|67438842 hsa-miR-4739 0 1 0
chr16:67438608|67438842 hsa-miR-5787 1 0 0
chr16:67438608|67438842 hsa-miR-6085 1 0 0
chr16:67438608|67438842 hsa-miR-6133 0 1 0
chr16:67438608|67438842 hsa-miR-8055 0 1 0
chr16:67438608|67438842 hsa-miR-8060 1 0 0
chr16:67438608|67438842 hsa-miR-8089 0 1 0
chr16:67438608|67438842 hsa-miR-12115 1 0 0
chr16:67438608|67438842 hsa-miR-4731-5p 1 0 0
chr16:67438608|67438842 hsa-miR-31-5p 0 1 0
chr16:67438608|67438842 hsa-miR-1287-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6894-5p 1 0 0
chr16:67438608|67438842 hsa-miR-139-3p 0 1 0
chr16:67438608|67438842 hsa-miR-6089 1 0 0
chr16:67438608|67438842 hsa-miR-6880-5p 1 0 0
chr16:67438608|67438842 hsa-miR-7847-3p 1 0 0
chr16:67438608|67438842 hsa-miR-4722-5p 1 0 0
chr16:67438608|67438842 hsa-miR-7154-3p 1 0 0
chr16:67438608|67438842 hsa-miR-3187-3p 0 1 0
chr16:67438608|67438842 hsa-miR-6768-5p 0 1 0
chr16:67438608|67438842 hsa-miR-6798-5p 1 1 0
chr16:67438608|67438842 hsa-miR-4711-3p 0 1 0
chr16:67438608|67438842 hsa-miR-5001-3p 0 1 0
chr16:67438608|67438842 hsa-miR-4638-3p 0 1 0
chr16:67438608|67438842 hsa-miR-3690 0 1 0
chr16:67438608|67438842 hsa-miR-6877-5p 1 0 0
chr16:67438608|67438842 hsa-miR-4740-5p 0 1 0
chr16:67438608|67438842 hsa-miR-516b-5p 0 1 0
chr16:67438608|67438842 hsa-miR-6730-3p 0 1 0
chr16:67438608|67438842 hsa-miR-4482-3p 1 0 0
chr16:67438608|67438842 hsa-miR-1233-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6778-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6754-5p 1 1 0
chr16:67438608|67438842 hsa-miR-6813-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6735-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6794-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6795-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6887-5p 1 0 0
chr16:67438608|67438842 hsa-miR-4665-5p 1 0 0
chr16:67438608|67438842 hsa-miR-6785-5p 1 0 0
chr16:67438608|67438842 hsa-miR-3928-5p 0 1 0
chr16:67438608|67438842 hsa-miR-4701-5p 0 1 0
chr16:67438608|67438842 hsa-miR-10394-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67438608|67438842
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MATESGLNHQVGLPLTSRPCRLTSCSKNRSSSVLSPGLL
Nucleotide Sequence ATGGCCACAGAGTCAGGTCTAAACCACCAGGTTGGCCTCCCTCTGACAAGCAGACCCTGCAGACTCACCTCGTGCTCAAAGAATCGGTCCTCCAGCGTCTTGTCTCCAGGGTTGCTA
CircID chr16:67438608|67438842
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MLLELHEGIEDTKVELVQEGQLVQLYLWTRADVVSRWPWPQSQV
Nucleotide Sequence CTGCTCCTTGAGCTTCACGAAGGCATAGAAGACACCAAAGTGGAACTGGTTCAGGAAGGCCAACTTGTTCAGCTTTACCTGTGGACACGGGCAGATGTGGTGTCCAGGTGGCCATGGCCACAGAGTCAGGTCTAA
CircID chr16:67438608|67438842
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MFSFTCGHGQMWCPGGHGHRVRSKPPGWPPSDKQTLQTHLVLKESVLQRLVSRVA
Nucleotide Sequence TTGTTCAGCTTTACCTGTGGACACGGGCAGATGTGGTGTCCAGGTGGCCATGGCCACAGAGTCAGGTCTAAACCACCAGGTTGGCCTCCCTCTGACAAGCAGACCCTGCAGACTCACCTCGTGCTCAAAGAATCGGTCCTCCAGCGTCTTGTCTCCAGGGTTGCT
CircID chr16:67438608|67438842
ORF Type ORF4
Protein Length 55
Nucleotide Length 165
Protein Sequence MSEGGQPGGLDLTLWPWPPGHHICPCPQVKLNKLAFLNQFHFGVFYAFVKLKEQE
Nucleotide Sequence TTGTCAGAGGGAGGCCAACCTGGTGGTTTAGACCTGACTCTGTGGCCATGGCCACCTGGACACCACATCTGCCCGTGTCCACAGGTAAAGCTGAACAAGTTGGCCTTCCTGAACCAGTTCCACTTTGGTGTCTTCTATGCCTTCGTGAAGCTCAAGGAGCAGGAG
CircID chr16:67438608|67438842
ORF Type ORF5
Protein Length 70
Nucleotide Length 210
Protein Sequence MEDRFFEHEVSLQGLLVRGRPTWWFRPDSVAMATWTPHLPVSTGKAEQVGLPEPVPLWCLLCLREAQGAG
Nucleotide Sequence CTGGAGGACCGATTCTTTGAGCACGAGGTGAGTCTGCAGGGTCTGCTTGTCAGAGGGAGGCCAACCTGGTGGTTTAGACCTGACTCTGTGGCCATGGCCACCTGGACACCACATCTGCCCGTGTCCACAGGTAAAGCTGAACAAGTTGGCCTTCCTGAACCAGTTCCACTTTGGTGTCTTCTATGCCTTCGTGAAGCTCAAGGAGCAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab