CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67439034|67439330
Strand +
CircType exon
Host Gene ENSG00000159720.10;
Algorism CIRI2;
Sequence AAGTTCTGCACCCTACTGGGCGGGACTACGGCTGATGCCATGTGCCCCATCCTGGAGGTGAGTGCCTGCCCGCCCTCCTGCCTGCTGGTGCCCGCTAGCCCTGGCCTGGGGAGGCTCTGCCAACTGACTGGCTACTGCCTCCTTCTTCCTCCCTCTCTTCTTACCTGTGCACTGGCTCCACAGTTTGAAGCAGACCGCCGCGCCTTCATCATCACCATCAATTCTTTCGGCACAGAGCTGTCCAAAGAGGACCGTGCCAAGCTCTTTCCACACTGTGGGCGGCTCTACCCTGAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67439034|67439330 hsa-miR-96-5p 0 0 1
chr16:67439034|67439330 hsa-miR-96-3p 0 0 1
chr16:67439034|67439330 hsa-miR-148a-5p 0 0 1
chr16:67439034|67439330 hsa-miR-148a-3p 0 0 1
chr16:67439034|67439330 hsa-miR-214-5p 0 0 1
chr16:67439034|67439330 hsa-miR-214-3p 0 0 1
chr16:67439034|67439330 hsa-miR-223-5p 0 0 1
chr16:67439034|67439330 hsa-miR-223-3p 0 0 1
chr16:67439034|67439330 hsa-miR-152-5p 0 0 1
chr16:67439034|67439330 hsa-miR-152-3p 0 0 1
chr16:67439034|67439330 hsa-miR-186-5p 0 0 1
chr16:67439034|67439330 hsa-miR-186-3p 0 0 1
chr16:67439034|67439330 hsa-miR-148b-5p 0 0 1
chr16:67439034|67439330 hsa-miR-148b-3p 0 0 1
chr16:67439034|67439330 hsa-miR-564 0 0 1
chr16:67439034|67439330 hsa-miR-575 0 1 1
chr16:67439034|67439330 hsa-miR-634 0 0 1
chr16:67439034|67439330 hsa-miR-650 1 1 1
chr16:67439034|67439330 hsa-miR-1271-5p 0 0 1
chr16:67439034|67439330 hsa-miR-1271-3p 0 0 1
chr16:67439034|67439330 hsa-miR-298 0 0 1
chr16:67439034|67439330 hsa-miR-665 0 0 1
chr16:67439034|67439330 hsa-miR-940 0 0 1
chr16:67439034|67439330 hsa-miR-1226-5p 0 0 1
chr16:67439034|67439330 hsa-miR-1226-3p 0 0 1
chr16:67439034|67439330 hsa-miR-548g-5p 0 0 1
chr16:67439034|67439330 hsa-miR-548g-3p 0 0 1
chr16:67439034|67439330 hsa-miR-1266-5p 0 0 1
chr16:67439034|67439330 hsa-miR-1266-3p 0 0 1
chr16:67439034|67439330 hsa-miR-1272 0 1 1
chr16:67439034|67439330 hsa-miR-1276 0 0 1
chr16:67439034|67439330 hsa-miR-1321 0 0 1
chr16:67439034|67439330 hsa-miR-1825 0 0 1
chr16:67439034|67439330 hsa-miR-1827 0 1 1
chr16:67439034|67439330 hsa-miR-486-3p 0 0 1
chr16:67439034|67439330 hsa-miR-524-3p 0 0 1
chr16:67439034|67439330 hsa-miR-525-3p 0 0 1
chr16:67439034|67439330 hsa-miR-128 0 0 1
chr16:67439034|67439330 hsa-miR-9 0 0 1
chr16:67439034|67439330 hsa-miR-663a 1 0 0
chr16:67439034|67439330 hsa-miR-657 1 0 0
chr16:67439034|67439330 hsa-miR-765 1 0 0
chr16:67439034|67439330 hsa-miR-1293 1 0 0
chr16:67439034|67439330 hsa-miR-3132 0 1 0
chr16:67439034|67439330 hsa-miR-3138 1 0 0
chr16:67439034|67439330 hsa-miR-3141 1 1 0
chr16:67439034|67439330 hsa-miR-3154 1 0 0
chr16:67439034|67439330 hsa-miR-3185 1 1 0
chr16:67439034|67439330 hsa-miR-3909 0 1 0
chr16:67439034|67439330 hsa-miR-3916 1 0 0
chr16:67439034|67439330 hsa-miR-3945 1 0 0
chr16:67439034|67439330 hsa-miR-4451 0 1 0
chr16:67439034|67439330 hsa-miR-4467 1 0 0
chr16:67439034|67439330 hsa-miR-4479 1 1 0
chr16:67439034|67439330 hsa-miR-4488 1 0 0
chr16:67439034|67439330 hsa-miR-4498 1 0 0
chr16:67439034|67439330 hsa-miR-4502 1 1 0
chr16:67439034|67439330 hsa-miR-2392 0 1 0
chr16:67439034|67439330 hsa-miR-4510 0 1 0
chr16:67439034|67439330 hsa-miR-4514 0 1 0
chr16:67439034|67439330 hsa-miR-4523 1 0 0
chr16:67439034|67439330 hsa-miR-4530 1 1 0
chr16:67439034|67439330 hsa-miR-4533 1 1 0
chr16:67439034|67439330 hsa-miR-4534 1 0 0
chr16:67439034|67439330 hsa-miR-4540 0 1 0
chr16:67439034|67439330 hsa-miR-3960 1 0 0
chr16:67439034|67439330 hsa-miR-4642 0 1 0
chr16:67439034|67439330 hsa-miR-4689 1 0 0
chr16:67439034|67439330 hsa-miR-4706 1 0 0
chr16:67439034|67439330 hsa-miR-4730 0 1 0
chr16:67439034|67439330 hsa-miR-4739 1 1 0
chr16:67439034|67439330 hsa-miR-4767 1 0 0
chr16:67439034|67439330 hsa-miR-5681a 1 0 0
chr16:67439034|67439330 hsa-miR-5787 1 0 0
chr16:67439034|67439330 hsa-miR-6077 1 1 0
chr16:67439034|67439330 hsa-miR-6081 1 0 0
chr16:67439034|67439330 hsa-miR-6088 1 0 0
chr16:67439034|67439330 hsa-miR-6090 1 0 0
chr16:67439034|67439330 hsa-miR-6125 1 0 0
chr16:67439034|67439330 hsa-miR-6126 1 1 0
chr16:67439034|67439330 hsa-miR-6127 1 1 0
chr16:67439034|67439330 hsa-miR-6133 1 1 0
chr16:67439034|67439330 hsa-miR-6165 1 0 0
chr16:67439034|67439330 hsa-miR-6745 1 0 0
chr16:67439034|67439330 hsa-miR-8072 1 0 0
chr16:67439034|67439330 hsa-miR-8075 1 0 0
chr16:67439034|67439330 hsa-miR-8085 1 0 0
chr16:67439034|67439330 hsa-miR-9899 1 0 0
chr16:67439034|67439330 hsa-miR-12115 1 0 0
chr16:67439034|67439330 hsa-miR-222-5p 1 1 0
chr16:67439034|67439330 hsa-miR-4433b-3p 1 0 0
chr16:67439034|67439330 hsa-miR-6765-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6894-5p 1 0 0
chr16:67439034|67439330 hsa-miR-1972 0 1 0
chr16:67439034|67439330 hsa-miR-125a-3p 1 0 0
chr16:67439034|67439330 hsa-miR-139-3p 1 0 0
chr16:67439034|67439330 hsa-miR-6833-5p 1 0 0
chr16:67439034|67439330 hsa-miR-3622a-5p 1 0 0
chr16:67439034|67439330 hsa-miR-3663-3p 1 0 0
chr16:67439034|67439330 hsa-miR-7114-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6089 1 0 0
chr16:67439034|67439330 hsa-miR-6807-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6873-5p 0 1 0
chr16:67439034|67439330 hsa-miR-6880-5p 1 0 0
chr16:67439034|67439330 hsa-miR-7847-3p 1 0 0
chr16:67439034|67439330 hsa-miR-4695-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6746-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4722-5p 1 1 0
chr16:67439034|67439330 hsa-miR-593-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6806-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6721-5p 1 1 0
chr16:67439034|67439330 hsa-miR-197-5p 0 1 0
chr16:67439034|67439330 hsa-miR-8069 1 0 0
chr16:67439034|67439330 hsa-miR-3151-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6805-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6798-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6760-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6881-5p 1 0 0
chr16:67439034|67439330 hsa-miR-5006-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6786-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4640-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6771-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4690-5p 1 1 0
chr16:67439034|67439330 hsa-miR-4717-3p 0 1 0
chr16:67439034|67439330 hsa-miR-149-3p 1 0 0
chr16:67439034|67439330 hsa-let-7g-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6886-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6781-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6877-5p 1 0 0
chr16:67439034|67439330 hsa-miR-7850-5p 0 1 0
chr16:67439034|67439330 hsa-miR-7112-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6895-5p 1 0 0
chr16:67439034|67439330 hsa-miR-744-5p 1 0 0
chr16:67439034|67439330 hsa-miR-2114-3p 0 1 0
chr16:67439034|67439330 hsa-miR-2277-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4766-5p 0 1 0
chr16:67439034|67439330 hsa-miR-5589-3p 0 1 0
chr16:67439034|67439330 hsa-miR-6755-5p 0 1 0
chr16:67439034|67439330 hsa-miR-219a-2-3p 1 0 0
chr16:67439034|67439330 hsa-miR-3680-5p 0 1 0
chr16:67439034|67439330 hsa-miR-3688-3p 0 1 0
chr16:67439034|67439330 hsa-miR-10400-5p 1 0 0
chr16:67439034|67439330 hsa-miR-1207-5p 1 1 0
chr16:67439034|67439330 hsa-miR-1233-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4763-3p 1 0 0
chr16:67439034|67439330 hsa-miR-6778-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6816-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6893-5p 1 1 0
chr16:67439034|67439330 hsa-miR-1343-5p 1 0 0
chr16:67439034|67439330 hsa-miR-5001-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6743-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6754-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6756-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6803-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6851-5p 1 0 0
chr16:67439034|67439330 hsa-miR-10401-5p 1 1 0
chr16:67439034|67439330 hsa-miR-11181-3p 1 0 0
chr16:67439034|67439330 hsa-miR-1249-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6722-3p 1 0 0
chr16:67439034|67439330 hsa-miR-6751-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6780a-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6797-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6808-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6879-5p 1 0 0
chr16:67439034|67439330 hsa-miR-7111-5p 1 1 0
chr16:67439034|67439330 hsa-miR-4728-5p 1 0 0
chr16:67439034|67439330 hsa-miR-5189-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6780b-5p 1 0 0
chr16:67439034|67439330 hsa-miR-10396b-5p 1 0 0
chr16:67439034|67439330 hsa-miR-1909-3p 1 0 0
chr16:67439034|67439330 hsa-miR-328-5p 1 1 0
chr16:67439034|67439330 hsa-miR-4632-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4649-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4685-5p 1 1 0
chr16:67439034|67439330 hsa-miR-4725-3p 1 0 0
chr16:67439034|67439330 hsa-miR-4749-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6729-5p 1 0 0
chr16:67439034|67439330 hsa-miR-675-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6795-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6848-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6858-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4697-5p 0 1 0
chr16:67439034|67439330 hsa-miR-6831-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6845-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6885-5p 1 0 0
chr16:67439034|67439330 hsa-miR-10394-3p 1 0 0
chr16:67439034|67439330 hsa-miR-34b-5p 0 1 0
chr16:67439034|67439330 hsa-miR-6511b-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6758-5p 1 1 0
chr16:67439034|67439330 hsa-miR-3173-3p 1 1 0
chr16:67439034|67439330 hsa-miR-4747-5p 1 0 0
chr16:67439034|67439330 hsa-miR-6876-5p 1 1 0
chr16:67439034|67439330 hsa-miR-6891-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4716-3p 1 0 0
chr16:67439034|67439330 hsa-miR-6837-5p 0 1 0
chr16:67439034|67439330 hsa-miR-9851-3p 1 1 0
chr16:67439034|67439330 hsa-miR-6823-3p 0 1 0
chr16:67439034|67439330 hsa-miR-4756-5p 1 0 0
chr16:67439034|67439330 hsa-miR-449b-5p 1 0 0
chr16:67439034|67439330 hsa-miR-4676-5p 0 1 0
chr16:67439034|67439330 hsa-miR-3619-5p 1 1 0
chr16:67439034|67439330 hsa-miR-2682-5p 0 1 0
chr16:67439034|67439330 hsa-miR-6503-5p 0 1 0
chr16:67439034|67439330 hsa-miR-371a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:67439034|67439330
ORF Type ORF1
Protein Length 94
Nucleotide Length 282
Protein Sequence MGGTTADAMCPILEVSACPPSCLLVPASPGLGRLCQLTGYCLLLPPSLLTCALAPQFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEG
Nucleotide Sequence CTGGGCGGGACTACGGCTGATGCCATGTGCCCCATCCTGGAGGTGAGTGCCTGCCCGCCCTCCTGCCTGCTGGTGCCCGCTAGCCCTGGCCTGGGGAGGCTCTGCCAACTGACTGGCTACTGCCTCCTTCTTCCTCCCTCTCTTCTTACCTGTGCACTGGCTCCACAGTTTGAAGCAGACCGCCGCGCCTTCATCATCACCATCAATTCTTTCGGCACAGAGCTGTCCAAAGAGGACCGTGCCAAGCTCTTTCCACACTGTGGGCGGCTCTACCCTGAGGGC
CircID chr16:67439034|67439330
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MATASFFLPLFLPVHWLHSLKQTAAPSSSPSILSAQSCPKRTVPSSFHTVGGSTLR
Nucleotide Sequence CTGGCTACTGCCTCCTTCTTCCTCCCTCTCTTCTTACCTGTGCACTGGCTCCACAGTTTGAAGCAGACCGCCGCGCCTTCATCATCACCATCAATTCTTTCGGCACAGAGCTGTCCAAAGAGGACCGTGCCAAGCTCTTTCCACACTGTGGGCGGCTCTACCCTGAGG
CircID chr16:67439034|67439330
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MWSQCTGKKRGRKKEAVASQLAEPPQARASGHQQAGGRAGTHLQDGAHGISRSPAQ
Nucleotide Sequence CTGTGGAGCCAGTGCACAGGTAAGAAGAGAGGGAGGAAGAAGGAGGCAGTAGCCAGTCAGTTGGCAGAGCCTCCCCAGGCCAGGGCTAGCGGGCACCAGCAGGCAGGAGGGCGGGCAGGCACTCACCTCCAGGATGGGGCACATGGCATCAGCCGTAGTCCCGCCCAGTAG
CircID chr16:67439034|67439330
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MARSSLDSSVPKELMVMMKARRSASNCGASAQVRREGGRRRQ
Nucleotide Sequence TTGGCACGGTCCTCTTTGGACAGCTCTGTGCCGAAAGAATTGATGGTGATGATGAAGGCGCGGCGGTCTGCTTCAAACTGTGGAGCCAGTGCACAGGTAAGAAGAGAGGGAGGAAGAAGGAGGCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab