CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67544796|67545070
Strand +
CircType exon
Host Gene ENSG00000039523.16;
Algorism CIRI2;
Sequence TGGTTGCAGAAGGTGAGAAGCACCCGCTCCACCGGGCAGAGGAAGCAGCTGAGTCTCTCTGTGCACTGGTCCCAGAAGGTCAGGAAGCCAGGCCGAGAGGCCGAGAACTGCACCACTTCCTGGGCAGAGCTGGCCGGGATCTCCCACCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67544796|67545070 hsa-miR-148a-5p 0 0 1
chr16:67544796|67545070 hsa-miR-148a-3p 0 0 1
chr16:67544796|67545070 hsa-miR-152-5p 0 0 1
chr16:67544796|67545070 hsa-miR-152-3p 0 0 1
chr16:67544796|67545070 hsa-miR-148b-5p 0 0 1
chr16:67544796|67545070 hsa-miR-148b-3p 0 0 1
chr16:67544796|67545070 hsa-miR-1229-5p 0 0 1
chr16:67544796|67545070 hsa-miR-1229-3p 0 0 1
chr16:67544796|67545070 hsa-miR-1234-3p 0 0 1
chr16:67544796|67545070 hsa-miR-1237-5p 0 0 1
chr16:67544796|67545070 hsa-miR-1237-3p 0 0 1
chr16:67544796|67545070 hsa-miR-1200 0 0 1
chr16:67544796|67545070 hsa-miR-1307-5p 0 0 1
chr16:67544796|67545070 hsa-miR-1307-3p 0 0 1
chr16:67544796|67545070 hsa-miR-1825 0 0 1
chr16:67544796|67545070 hsa-miR-1234 0 0 1
chr16:67544796|67545070 hsa-miR-512-5p 0 0 1
chr16:67544796|67545070 hsa-miR-1207-3p 0 0 1
chr16:67544796|67545070 hsa-miR-324-3p 0 0 1
chr16:67544796|67545070 hsa-miR-516a-3p 0 0 1
chr16:67544796|67545070 hsa-miR-544 0 0 1
chr16:67544796|67545070 hsa-miR-886-3p 0 0 1
chr16:67544796|67545070 hsa-miR-609 0 1 0
chr16:67544796|67545070 hsa-miR-661 1 0 0
chr16:67544796|67545070 hsa-miR-933 1 1 0
chr16:67544796|67545070 hsa-miR-4683 0 1 0
chr16:67544796|67545070 hsa-miR-4767 1 0 0
chr16:67544796|67545070 hsa-miR-6075 1 0 0
chr16:67544796|67545070 hsa-miR-143-5p 0 1 0
chr16:67544796|67545070 hsa-miR-6840-3p 0 1 0
chr16:67544796|67545070 hsa-miR-6762-3p 0 1 0
chr16:67544796|67545070 hsa-miR-6787-3p 1 1 0
chr16:67544796|67545070 hsa-miR-6786-5p 0 1 0
chr16:67544796|67545070 hsa-miR-4783-3p 0 1 0
chr16:67544796|67545070 hsa-miR-378a-5p 0 1 0
chr16:67544796|67545070 hsa-miR-1251-3p 0 1 0
chr16:67544796|67545070 hsa-miR-6895-3p 0 1 0
chr16:67544796|67545070 hsa-miR-1233-5p 1 1 0
chr16:67544796|67545070 hsa-miR-6778-5p 0 1 0
chr16:67544796|67545070 hsa-miR-6845-5p 1 1 0
chr16:67544796|67545070 hsa-miR-3059-5p 0 1 0
chr16:67544796|67545070 hsa-miR-6744-3p 0 1 0
chr16:67544796|67545070 hsa-miR-7162-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67544796|67545070
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MQKVRSTRSTGQRKQLSLSVHWSQKVRKPGREAENCTTSWAELAGISHR
Nucleotide Sequence TTGCAGAAGGTGAGAAGCACCCGCTCCACCGGGCAGAGGAAGCAGCTGAGTCTCTCTGTGCACTGGTCCCAGAAGGTCAGGAAGCCAGGCCGAGAGGCCGAGAACTGCACCACTTCCTGGGCAGAGCTGGCCGGGATCTCCCACCGC
CircID chr16:67544796|67545070
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MCTGPRRSGSQAERPRTAPLPGQSWPGSPT
Nucleotide Sequence CTGTGCACTGGTCCCAGAAGGTCAGGAAGCCAGGCCGAGAGGCCGAGAACTGCACCACTTCCTGGGCAGAGCTGGCCGGGATCTCCCACC
CircID chr16:67544796|67545070
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MVPEGQEARPRGRELHHFLGRAGRDLPP
Nucleotide Sequence CTGGTCCCAGAAGGTCAGGAAGCCAGGCCGAGAGGCCGAGAACTGCACCACTTCCTGGGCAGAGCTGGCCGGGATCTCCCACCG
CircID chr16:67544796|67545070
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MGPVHRETQLLPLPGGAGASHLLQP
Nucleotide Sequence CTGGGACCAGTGCACAGAGAGACTCAGCTGCTTCCTCTGCCCGGTGGAGCGGGTGCTTCTCACCTTCTGCAACCA
CircID chr16:67544796|67545070
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MTFWDQCTERLSCFLCPVERVLLTFCN
Nucleotide Sequence CTGACCTTCTGGGACCAGTGCACAGAGAGACTCAGCTGCTTCCTCTGCCCGGTGGAGCGGGTGCTTCTCACCTTCTGCAAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab