CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67647120|67647349
Strand -
CircType exon
Host Gene ENSG00000159753.12;
Algorism CIRI2;
Sequence CTGGCCTTGAGTGTGGCTGCCCTGTCCTACAACCTGTGGTTCCGGTGCCTCTCCTGTGTGGACATGAAGCTGGTGAGGGGGTTCGGGGTAAGGGCAGGGAGGGGCCAAGGGTGTGGGCCAGGGTGCAGCCCGCTGAGGGCCAGGGTGCAGCCCGTGAGCCGCCGCCCTCTGCTTCTCAGAGCCTTGAGGTCTCAGAACAGATTCTGCACATGATGAGTCAGTCATCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67647120|67647349 hsa-miR-328-5p 0 0 1
chr16:67647120|67647349 hsa-miR-328-3p 0 0 1
chr16:67647120|67647349 hsa-miR-345-5p 0 0 1
chr16:67647120|67647349 hsa-miR-345-3p 0 0 1
chr16:67647120|67647349 hsa-miR-298 0 0 1
chr16:67647120|67647349 hsa-miR-760 0 0 1
chr16:67647120|67647349 hsa-miR-938 0 1 1
chr16:67647120|67647349 hsa-miR-1226-5p 0 0 1
chr16:67647120|67647349 hsa-miR-1226-3p 0 0 1
chr16:67647120|67647349 hsa-miR-1291 0 0 1
chr16:67647120|67647349 hsa-miR-1253 0 0 1
chr16:67647120|67647349 hsa-miR-1197 0 0 1
chr16:67647120|67647349 hsa-miR-769-5p 1 1 1
chr16:67647120|67647349 hsa-miR-140-3p 0 1 1
chr16:67647120|67647349 hsa-miR-1300 0 0 1
chr16:67647120|67647349 hsa-miR-923 0 0 1
chr16:67647120|67647349 hsa-miR-663a 1 0 0
chr16:67647120|67647349 hsa-miR-3183 1 0 0
chr16:67647120|67647349 hsa-miR-4313 1 0 0
chr16:67647120|67647349 hsa-miR-4329 0 1 0
chr16:67647120|67647349 hsa-miR-3943 1 0 0
chr16:67647120|67647349 hsa-miR-4467 0 1 0
chr16:67647120|67647349 hsa-miR-4469 1 0 0
chr16:67647120|67647349 hsa-miR-3960 0 1 0
chr16:67647120|67647349 hsa-miR-4767 1 0 0
chr16:67647120|67647349 hsa-miR-7703 1 1 0
chr16:67647120|67647349 hsa-miR-96-3p 0 1 0
chr16:67647120|67647349 hsa-miR-18a-3p 0 1 0
chr16:67647120|67647349 hsa-miR-6747-3p 1 0 0
chr16:67647120|67647349 hsa-miR-1273h-3p 1 0 0
chr16:67647120|67647349 hsa-miR-212-5p 0 1 0
chr16:67647120|67647349 hsa-miR-150-5p 1 0 0
chr16:67647120|67647349 hsa-miR-1915-5p 1 0 0
chr16:67647120|67647349 hsa-miR-6768-5p 0 1 0
chr16:67647120|67647349 hsa-miR-6829-5p 0 1 0
chr16:67647120|67647349 hsa-miR-3130-3p 0 1 0
chr16:67647120|67647349 hsa-miR-2467-3p 0 1 0
chr16:67647120|67647349 hsa-miR-4793-5p 0 1 0
chr16:67647120|67647349 hsa-miR-7113-3p 1 1 0
chr16:67647120|67647349 hsa-miR-6878-3p 0 1 0
chr16:67647120|67647349 hsa-miR-4640-3p 1 1 0
chr16:67647120|67647349 hsa-miR-6769a-3p 1 1 0
chr16:67647120|67647349 hsa-miR-339-5p 1 0 0
chr16:67647120|67647349 hsa-miR-3678-3p 1 1 0
chr16:67647120|67647349 hsa-miR-3922-5p 0 1 0
chr16:67647120|67647349 hsa-miR-6813-3p 1 1 0
chr16:67647120|67647349 hsa-miR-6887-3p 0 1 0
chr16:67647120|67647349 hsa-miR-6793-3p 1 0 0
chr16:67647120|67647349 hsa-miR-6871-3p 0 1 0
chr16:67647120|67647349 hsa-miR-6752-3p 1 1 0
chr16:67647120|67647349 hsa-miR-3940-3p 1 0 0
chr16:67647120|67647349 hsa-miR-6826-3p 1 1 0
chr16:67647120|67647349 hsa-miR-6886-3p 0 1 0
chr16:67647120|67647349 hsa-miR-4749-3p 0 1 0
chr16:67647120|67647349 hsa-miR-6795-3p 1 0 0
chr16:67647120|67647349 hsa-miR-5004-5p 0 1 0
chr16:67647120|67647349 hsa-miR-3620-3p 0 1 0
chr16:67647120|67647349 hsa-miR-1229-3p 1 0 0
chr16:67647120|67647349 hsa-miR-1249-3p 0 1 0
chr16:67647120|67647349 hsa-miR-10400-5p 1 1 0
chr16:67647120|67647349 hsa-miR-6743-5p 1 0 0
chr16:67647120|67647349 hsa-miR-3127-3p 1 0 0
chr16:67647120|67647349 hsa-miR-1909-3p 0 1 0
chr16:67647120|67647349 hsa-miR-1266-5p 0 1 0
chr16:67647120|67647349 hsa-miR-6756-3p 0 1 0
chr16:67647120|67647349 hsa-miR-10401-3p 1 0 0
chr16:67647120|67647349 hsa-miR-504-5p 0 1 0
chr16:67647120|67647349 hsa-miR-3150b-5p 1 0 0
chr16:67647120|67647349 hsa-miR-135a-2-3p 0 1 0
chr16:67647120|67647349 hsa-miR-412-3p 1 0 0
chr16:67647120|67647349 hsa-miR-129-1-3p 0 1 0
chr16:67647120|67647349 hsa-miR-129-2-3p 0 1 0
chr16:67647120|67647349 hsa-miR-147b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:67647120|67647349
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence LALSVAALSYNLWFRCLSCVDMKLVRGFGVRAGRGQGCGPGCSPLRARVQPVSRRPLLLRALRSQNRFCT
Nucleotide Sequence CTGGCCTTGAGTGTGGCTGCCCTGTCCTACAACCTGTGGTTCCGGTGCCTCTCCTGTGTGGACATGAAGCTGGTGAGGGGGTTCGGGGTAAGGGCAGGGAGGGGCCAAGGGTGTGGGCCAGGGTGCAGCCCGCTGAGGGCCAGGGTGCAGCCCGTGAGCCGCCGCCCTCTGCTTCTCAGAGCCTTGAGGTCTCAGAACAGATTCTGCACATGA
CircID chr16:67647120|67647349
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MCGHEAGEGVRGKGREGPRVWARVQPAEGQGAAREPPPSASQSLEVSEQILHMMSQSSH
Nucleotide Sequence CTGTGTGGACATGAAGCTGGTGAGGGGGTTCGGGGTAAGGGCAGGGAGGGGCCAAGGGTGTGGGCCAGGGTGCAGCCCGCTGAGGGCCAGGGTGCAGCCCGTGAGCCGCCGCCCTCTGCTTCTCAGAGCCTTGAGGTCTCAGAACAGATTCTGCACATGATGAGTCAGTCATCACAC
CircID chr16:67647120|67647349
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MRSRGRRLTGCTLALSGLHPGPHPWPLPALTPNPLTSFMSTQERHRNHRL
Nucleotide Sequence CTGAGAAGCAGAGGGCGGCGGCTCACGGGCTGCACCCTGGCCCTCAGCGGGCTGCACCCTGGCCCACACCCTTGGCCCCTCCCTGCCCTTACCCCGAACCCCCTCACCAGCTTCATGTCCACACAGGAGAGGCACCGGAACCACAGGTTGTAG
CircID chr16:67647120|67647349
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MAHTLGPSLPLPRTPSPASCPHRRGTGTTGCRTGQPHSRP
Nucleotide Sequence CTGGCCCACACCCTTGGCCCCTCCCTGCCCTTACCCCGAACCCCCTCACCAGCTTCATGTCCACACAGGAGAGGCACCGGAACCACAGGTTGTAGGACAGGGCAGCCACACTCAAGGCCA
CircID chr16:67647120|67647349
ORF Type ORF5
Protein Length 75
Nucleotide Length 225
Protein Sequence MTDSSCAESVLRPQGSEKQRAAAHGLHPGPQRAAPWPTPLAPPCPYPEPPHQLHVHTGEAPEPQVVGQGSHTQGQ
Nucleotide Sequence ATGACTGACTCATCATGTGCAGAATCTGTTCTGAGACCTCAAGGCTCTGAGAAGCAGAGGGCGGCGGCTCACGGGCTGCACCCTGGCCCTCAGCGGGCTGCACCCTGGCCCACACCCTTGGCCCCTCCCTGCCCTTACCCCGAACCCCCTCACCAGCTTCATGTCCACACAGGAGAGGCACCGGAACCACAGGTTGTAGGACAGGGCAGCCACACTCAAGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab