CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67882465|67882755
Strand -
CircType exon
Host Gene ENSG00000038358.13;
Algorism CIRI2;
Sequence ACATTACAAGGGCCGATGCAGGCTGCCTACCGGGAAGCCTTCCAGAGTGTGGTGCTGCCGGCCTTTGAGAAGAGCTGCCAGGCCATGTTCCAGCAAATCAATGATAGCTTCCGGCTGGGGACACAGGAATGTGAGTGGGGTCATATGGCCCAAGGTGGGAGGGGTTATCCTCTTTCCTACTGTTCCTCTTATAGTCCCTGTGGTCACCCCTCAGACTTGCAGCAGCTAGAAAGCCACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAGCCTGTGCTAGCCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67882465|67882755 hsa-miR-22-5p 0 0 1
chr16:67882465|67882755 hsa-miR-22-3p 0 0 1
chr16:67882465|67882755 hsa-miR-23a-5p 0 0 1
chr16:67882465|67882755 hsa-miR-23a-3p 0 0 1
chr16:67882465|67882755 hsa-miR-29a-5p 0 0 1
chr16:67882465|67882755 hsa-miR-29a-3p 0 0 1
chr16:67882465|67882755 hsa-miR-23b-5p 0 0 1
chr16:67882465|67882755 hsa-miR-23b-3p 0 0 1
chr16:67882465|67882755 hsa-miR-29c-5p 0 0 1
chr16:67882465|67882755 hsa-miR-29c-3p 0 0 1
chr16:67882465|67882755 hsa-miR-484 0 1 1
chr16:67882465|67882755 hsa-miR-583 0 1 1
chr16:67882465|67882755 hsa-miR-596 0 1 1
chr16:67882465|67882755 hsa-miR-621 0 1 1
chr16:67882465|67882755 hsa-miR-635 0 0 1
chr16:67882465|67882755 hsa-miR-940 0 0 1
chr16:67882465|67882755 hsa-miR-942-5p 0 0 1
chr16:67882465|67882755 hsa-miR-942-3p 0 0 1
chr16:67882465|67882755 hsa-miR-1180-5p 0 0 1
chr16:67882465|67882755 hsa-miR-1180-3p 0 0 1
chr16:67882465|67882755 hsa-miR-1287-5p 0 0 1
chr16:67882465|67882755 hsa-miR-1287-3p 0 0 1
chr16:67882465|67882755 hsa-miR-1299 0 0 1
chr16:67882465|67882755 hsa-miR-513c-5p 0 0 1
chr16:67882465|67882755 hsa-miR-513c-3p 0 0 1
chr16:67882465|67882755 hsa-miR-532-3p 0 0 1
chr16:67882465|67882755 hsa-miR-885-3p 0 0 1
chr16:67882465|67882755 hsa-miR-423-5p 0 0 1
chr16:67882465|67882755 hsa-miR-1224-3p 0 0 1
chr16:67882465|67882755 hsa-miR-875-3p 0 0 1
chr16:67882465|67882755 hsa-miR-140-3p 0 1 1
chr16:67882465|67882755 hsa-miR-371-5p 0 0 1
chr16:67882465|67882755 hsa-miR-1260 0 0 1
chr16:67882465|67882755 hsa-miR-1280 0 0 1
chr16:67882465|67882755 hsa-miR-220c 0 0 1
chr16:67882465|67882755 hsa-miR-29b 0 0 1
chr16:67882465|67882755 hsa-miR-1185 0 0 1
chr16:67882465|67882755 hsa-miR-644a 0 1 0
chr16:67882465|67882755 hsa-miR-646 1 0 0
chr16:67882465|67882755 hsa-miR-762 1 0 0
chr16:67882465|67882755 hsa-miR-1260a 0 1 0
chr16:67882465|67882755 hsa-miR-2861 1 0 0
chr16:67882465|67882755 hsa-miR-3125 0 1 0
chr16:67882465|67882755 hsa-miR-4269 1 0 0
chr16:67882465|67882755 hsa-miR-23c 0 1 0
chr16:67882465|67882755 hsa-miR-4498 1 0 0
chr16:67882465|67882755 hsa-miR-4660 0 1 0
chr16:67882465|67882755 hsa-miR-6068 1 0 0
chr16:67882465|67882755 hsa-miR-6069 1 0 0
chr16:67882465|67882755 hsa-miR-8073 0 1 0
chr16:67882465|67882755 hsa-miR-9500 0 1 0
chr16:67882465|67882755 hsa-miR-12119 1 1 0
chr16:67882465|67882755 hsa-miR-211-3p 0 1 0
chr16:67882465|67882755 hsa-miR-6734-5p 0 1 0
chr16:67882465|67882755 hsa-miR-6747-5p 1 0 0
chr16:67882465|67882755 hsa-miR-671-5p 1 0 0
chr16:67882465|67882755 hsa-miR-3064-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6806-5p 1 1 0
chr16:67882465|67882755 hsa-miR-185-3p 1 0 0
chr16:67882465|67882755 hsa-miR-6829-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6782-5p 1 1 0
chr16:67882465|67882755 hsa-miR-4711-3p 0 1 0
chr16:67882465|67882755 hsa-miR-1226-5p 1 0 0
chr16:67882465|67882755 hsa-miR-7113-3p 0 1 0
chr16:67882465|67882755 hsa-miR-1228-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6878-3p 0 1 0
chr16:67882465|67882755 hsa-miR-4743-5p 1 0 0
chr16:67882465|67882755 hsa-miR-4787-5p 1 0 0
chr16:67882465|67882755 hsa-miR-1266-3p 0 1 0
chr16:67882465|67882755 hsa-miR-2276-3p 0 1 0
chr16:67882465|67882755 hsa-miR-4684-3p 1 1 0
chr16:67882465|67882755 hsa-miR-3065-3p 0 1 0
chr16:67882465|67882755 hsa-miR-3189-3p 0 1 0
chr16:67882465|67882755 hsa-miR-4707-5p 1 0 0
chr16:67882465|67882755 hsa-miR-7106-3p 0 1 0
chr16:67882465|67882755 hsa-miR-660-3p 0 1 0
chr16:67882465|67882755 hsa-miR-6813-3p 0 1 0
chr16:67882465|67882755 hsa-miR-6887-3p 0 1 0
chr16:67882465|67882755 hsa-miR-3160-5p 0 1 0
chr16:67882465|67882755 hsa-miR-6770-3p 1 0 0
chr16:67882465|67882755 hsa-miR-518c-5p 0 1 0
chr16:67882465|67882755 hsa-miR-7152-5p 0 1 0
chr16:67882465|67882755 hsa-miR-1185-5p 0 1 0
chr16:67882465|67882755 hsa-miR-6812-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6726-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6737-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6752-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6803-5p 1 0 0
chr16:67882465|67882755 hsa-miR-7110-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6763-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6774-5p 0 1 0
chr16:67882465|67882755 hsa-miR-3620-5p 1 0 0
chr16:67882465|67882755 hsa-miR-4749-5p 1 0 0
chr16:67882465|67882755 hsa-miR-6738-5p 1 1 0
chr16:67882465|67882755 hsa-miR-939-5p 1 0 0
chr16:67882465|67882755 hsa-miR-1914-3p 1 1 0
chr16:67882465|67882755 hsa-miR-6791-3p 0 1 0
chr16:67882465|67882755 hsa-miR-10398-5p 0 1 0
chr16:67882465|67882755 hsa-miR-6829-3p 0 1 0
chr16:67882465|67882755 hsa-miR-6529-3p 0 1 0
chr16:67882465|67882755 hsa-miR-6859-5p 0 1 0
chr16:67882465|67882755 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:67882465|67882755
ORF Type ORF1
Protein Length 92
Nucleotide Length 276
Protein Sequence MQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQECEWGHMAQGGRGYPLSYCSSYSPCGHPSDLQQLESHMKSRKAREQEAREPVLAQ
Nucleotide Sequence ATGCAGGCTGCCTACCGGGAAGCCTTCCAGAGTGTGGTGCTGCCGGCCTTTGAGAAGAGCTGCCAGGCCATGTTCCAGCAAATCAATGATAGCTTCCGGCTGGGGACACAGGAATGTGAGTGGGGTCATATGGCCCAAGGTGGGAGGGGTTATCCTCTTTCCTACTGTTCCTCTTATAGTCCCTGTGGTCACCCCTCAGACTTGCAGCAGCTAGAAAGCCACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAGCCTGTGCTAGCCCAG
CircID chr16:67882465|67882755
ORF Type ORF2
Protein Length 68
Nucleotide Length 207
Protein Sequence MPTGKPSRVWCCRPLRRAARPCSSKSMIASGWGHRNVSGVIWPKVGGVILFPTVPLIVPVVTPQTCSS
Nucleotide Sequence CTGCCTACCGGGAAGCCTTCCAGAGTGTGGTGCTGCCGGCCTTTGAGAAGAGCTGCCAGGCCATGTTCCAGCAAATCAATGATAGCTTCCGGCTGGGGACACAGGAATGTGAGTGGGGTCATATGGCCCAAGGTGGGAGGGGTTATCCTCTTTCCTACTGTTCCTCTTATAGTCCCTGTGGTCACCCCTCAGACTTGCAGCAGCTAG
CircID chr16:67882465|67882755
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MWSPLRLAAARKPHEEPEGTGTGGQGACASP
Nucleotide Sequence CTGTGGTCACCCCTCAGACTTGCAGCAGCTAGAAAGCCACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAGCCTGTGCTAGCCCA
CircID chr16:67882465|67882755
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MGHMTPLTFLCPQPEAIIDLLEHGLAALLKGRQHHTLEGFPVGSLHRPL
Nucleotide Sequence TTGGGCCATATGACCCCACTCACATTCCTGTGTCCCCAGCCGGAAGCTATCATTGATTTGCTGGAACATGGCCTGGCAGCTCTTCTCAAAGGCCGGCAGCACCACACTCTGGAAGGCTTCCCGGTAGGCAGCCTGCATCGGCCCTTGTAA
CircID chr16:67882465|67882755
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MRGDHRDYKRNSRKEDNPSHLGPYDPTHIPVSPAGSYH
Nucleotide Sequence CTGAGGGGTGACCACAGGGACTATAAGAGGAACAGTAGGAAAGAGGATAACCCCTCCCACCTTGGGCCATATGACCCCACTCACATTCCTGTGTCCCCAGCCGGAAGCTATCATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab