CircRNA Information

General Information
circRNA Basic Information
CircID chr16:67882546|67882743
Strand +
CircType exon
Host Gene ENSG00000038358.13;
Algorism CIRI2;
Sequence AGGCTCCCTGGCCTCCTGTTCCCGTGCCTTCCGGCTCTTCATGTGGCTTTCTAGCTGCTGCAAGTCTGAGGGGTGACCACAGGGACTATAAGAGGAACAGTAGGAAAGAGGATAACCCCTCCCACCTTGGGCCATATGACCCCACTCACATTCCTGTGTCCCCAGCCGGAAGCTATCATTGATTTGCTGGAACATGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:67882546|67882743 hsa-miR-107 0 0 1
chr16:67882546|67882743 hsa-miR-206 0 1 1
chr16:67882546|67882743 hsa-miR-384 0 0 1
chr16:67882546|67882743 hsa-miR-452-5p 0 0 1
chr16:67882546|67882743 hsa-miR-452-3p 0 0 1
chr16:67882546|67882743 hsa-miR-506-5p 0 0 1
chr16:67882546|67882743 hsa-miR-506-3p 0 0 1
chr16:67882546|67882743 hsa-miR-545-5p 0 0 1
chr16:67882546|67882743 hsa-miR-545-3p 0 0 1
chr16:67882546|67882743 hsa-miR-564 0 1 1
chr16:67882546|67882743 hsa-miR-613 0 0 1
chr16:67882546|67882743 hsa-miR-646 0 0 1
chr16:67882546|67882743 hsa-miR-1301-5p 0 0 1
chr16:67882546|67882743 hsa-miR-1301-3p 0 0 1
chr16:67882546|67882743 hsa-miR-1180-5p 0 0 1
chr16:67882546|67882743 hsa-miR-1180-3p 0 0 1
chr16:67882546|67882743 hsa-miR-615-5p 0 0 1
chr16:67882546|67882743 hsa-miR-339-5p 0 0 1
chr16:67882546|67882743 hsa-miR-338-3p 0 0 1
chr16:67882546|67882743 hsa-miR-1274a 0 0 1
chr16:67882546|67882743 hsa-miR-103 0 0 1
chr16:67882546|67882743 hsa-miR-1274b 0 0 1
chr16:67882546|67882743 hsa-miR-124 0 0 1
chr16:67882546|67882743 hsa-miR-1 0 0 1
chr16:67882546|67882743 hsa-miR-762 1 0 0
chr16:67882546|67882743 hsa-miR-3138 1 0 0
chr16:67882546|67882743 hsa-miR-4298 1 0 0
chr16:67882546|67882743 hsa-miR-4326 0 1 0
chr16:67882546|67882743 hsa-miR-4681 0 1 0
chr16:67882546|67882743 hsa-miR-5787 1 1 0
chr16:67882546|67882743 hsa-miR-6081 1 0 0
chr16:67882546|67882743 hsa-miR-6125 0 1 0
chr16:67882546|67882743 hsa-miR-6165 0 1 0
chr16:67882546|67882743 hsa-miR-8060 0 1 0
chr16:67882546|67882743 hsa-miR-8089 1 1 0
chr16:67882546|67882743 hsa-miR-4731-5p 1 1 0
chr16:67882546|67882743 hsa-miR-7155-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6879-3p 0 1 0
chr16:67882546|67882743 hsa-miR-4433a-3p 1 1 0
chr16:67882546|67882743 hsa-miR-671-5p 1 1 0
chr16:67882546|67882743 hsa-miR-6881-3p 0 1 0
chr16:67882546|67882743 hsa-miR-224-5p 0 1 0
chr16:67882546|67882743 hsa-miR-3622a-5p 1 1 0
chr16:67882546|67882743 hsa-miR-4695-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6746-5p 1 0 0
chr16:67882546|67882743 hsa-miR-4753-5p 0 1 0
chr16:67882546|67882743 hsa-miR-3622b-5p 1 0 0
chr16:67882546|67882743 hsa-miR-7108-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6742-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6768-5p 0 1 0
chr16:67882546|67882743 hsa-miR-1292-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6793-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6798-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6810-5p 0 1 0
chr16:67882546|67882743 hsa-miR-30b-3p 0 1 0
chr16:67882546|67882743 hsa-miR-6786-5p 1 0 0
chr16:67882546|67882743 hsa-miR-1229-5p 1 0 0
chr16:67882546|67882743 hsa-miR-4743-5p 1 1 0
chr16:67882546|67882743 hsa-miR-146b-3p 0 1 0
chr16:67882546|67882743 hsa-miR-6781-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6814-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6802-3p 0 1 0
chr16:67882546|67882743 hsa-miR-130b-5p 0 1 0
chr16:67882546|67882743 hsa-miR-5587-5p 0 1 0
chr16:67882546|67882743 hsa-miR-124-3p 0 1 0
chr16:67882546|67882743 hsa-miR-4763-3p 1 0 0
chr16:67882546|67882743 hsa-miR-6769b-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6737-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6756-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6803-5p 1 0 0
chr16:67882546|67882743 hsa-miR-6819-5p 1 0 0
chr16:67882546|67882743 hsa-miR-11181-3p 1 0 0
chr16:67882546|67882743 hsa-miR-6779-5p 0 1 0
chr16:67882546|67882743 hsa-miR-328-5p 1 0 0
chr16:67882546|67882743 hsa-miR-4726-5p 0 1 0
chr16:67882546|67882743 hsa-miR-4745-5p 1 0 0
chr16:67882546|67882743 hsa-miR-1238-5p 1 1 0
chr16:67882546|67882743 hsa-miR-4758-5p 1 1 0
chr16:67882546|67882743 hsa-miR-1914-3p 1 0 0
chr16:67882546|67882743 hsa-miR-4700-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6750-5p 1 0 0
chr16:67882546|67882743 hsa-miR-4667-5p 0 1 0
chr16:67882546|67882743 hsa-miR-6790-5p 1 0 0
chr16:67882546|67882743 hsa-miR-487b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:67882546|67882743
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MRGDHRDYKRNSRKEDNPSHLGPYDPTHIPVSPAGSYH
Nucleotide Sequence CTGAGGGGTGACCACAGGGACTATAAGAGGAACAGTAGGAAAGAGGATAACCCCTCCCACCTTGGGCCATATGACCCCACTCACATTCCTGTGTCCCCAGCCGGAAGCTATCATTGA
CircID chr16:67882546|67882743
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MFQQINDSFRLGTQECEWGHMAQGGRGYPLSYCSSYSPCGHPSDLQQLESHMKSRKAREQEAREP
Nucleotide Sequence ATGTTCCAGCAAATCAATGATAGCTTCCGGCTGGGGACACAGGAATGTGAGTGGGGTCATATGGCCCAAGGTGGGAGGGGTTATCCTCTTTCCTACTGTTCCTCTTATAGTCCCTGTGGTCACCCCTCAGACTTGCAGCAGCTAGAAAGCCACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAGCCT
CircID chr16:67882546|67882743
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MIASGWGHRNVSGVIWPKVGGVILFPTVPLIVPVVTPQTCSS
Nucleotide Sequence ATGATAGCTTCCGGCTGGGGACACAGGAATGTGAGTGGGGTCATATGGCCCAAGGTGGGAGGGGTTATCCTCTTTCCTACTGTTCCTCTTATAGTCCCTGTGGTCACCCCTCAGACTTGCAGCAGCTAG
CircID chr16:67882546|67882743
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MWSPLRLAAARKPHEEPEGTGTGGQGA
Nucleotide Sequence CTGTGGTCACCCCTCAGACTTGCAGCAGCTAGAAAGCCACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab