CircRNA Information

General Information
circRNA Basic Information
CircID chr16:68226970|68227153
Strand +
CircType exon
Host Gene ENSG00000072736.17;
Algorism CIRI2;
Sequence CAAAAGGCTATGCTCTGGAATGTCTTTTTATATTCCAACACTTCAATGATGGAATGGTCTCTTCTCATTTTATCTAACAACAGTTTAGTTTTATAAAGAGGTATGAGCTACATTTGGCTTTATTTCCTATAAATCTATGAACGTCTTCAGGACACATGCTGACTTTCTGAGGCATAGGTGTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:68226970|68227153 hsa-miR-340-5p 0 0 1
chr16:68226970|68227153 hsa-miR-340-3p 0 0 1
chr16:68226970|68227153 hsa-miR-376b-5p 0 0 1
chr16:68226970|68227153 hsa-miR-376b-3p 0 0 1
chr16:68226970|68227153 hsa-miR-573 0 0 1
chr16:68226970|68227153 hsa-miR-577 0 0 1
chr16:68226970|68227153 hsa-miR-641 0 1 1
chr16:68226970|68227153 hsa-miR-1228-5p 0 0 1
chr16:68226970|68227153 hsa-miR-1228-3p 0 0 1
chr16:68226970|68227153 hsa-miR-548e-5p 0 0 1
chr16:68226970|68227153 hsa-miR-548e-3p 0 0 1
chr16:68226970|68227153 hsa-miR-1253 0 1 1
chr16:68226970|68227153 hsa-miR-548g-5p 0 0 1
chr16:68226970|68227153 hsa-miR-548g-3p 0 0 1
chr16:68226970|68227153 hsa-miR-525-5p 0 0 1
chr16:68226970|68227153 hsa-miR-532-5p 0 0 1
chr16:68226970|68227153 hsa-miR-875-5p 0 0 1
chr16:68226970|68227153 hsa-miR-520a-5p 0 0 1
chr16:68226970|68227153 hsa-miR-548a-3p 0 0 1
chr16:68226970|68227153 hsa-miR-548f 0 0 1
chr16:68226970|68227153 hsa-miR-1300 0 0 1
chr16:68226970|68227153 hsa-miR-376a 0 0 1
chr16:68226970|68227153 hsa-miR-4475 0 1 0
chr16:68226970|68227153 hsa-miR-550b-2-5p 0 1 0
chr16:68226970|68227153 hsa-miR-5197-3p 0 1 0
chr16:68226970|68227153 hsa-miR-6505-5p 0 1 0
chr16:68226970|68227153 hsa-miR-216b-3p 0 1 0
chr16:68226970|68227153 hsa-miR-1-5p 0 1 0
chr16:68226970|68227153 hsa-miR-1-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:68226970|68227153
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLWNVFLYSNTSMMEWSLLILSNNSLVL
Nucleotide Sequence ATGCTCTGGAATGTCTTTTTATATTCCAACACTTCAATGATGGAATGGTCTCTTCTCATTTTATCTAACAACAGTTTAGTTTTATAA
CircID chr16:68226970|68227153
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MPQKVSMCPEDVHRFIGNKAKCSSYLFIKLNCC
Nucleotide Sequence ATGCCTCAGAAAGTCAGCATGTGTCCTGAAGACGTTCATAGATTTATAGGAAATAAAGCCAAATGTAGCTCATACCTCTTTATAAAACTAAACTGTTGTTAG
CircID chr16:68226970|68227153
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MLLDKMRRDHSIIEVLEYKKTFQSIAF
Nucleotide Sequence CTGTTGTTAGATAAAATGAGAAGAGACCATTCCATCATTGAAGTGTTGGAATATAAAAAGACATTCCAGAGCATAGCCTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab