CircRNA Information

General Information
circRNA Basic Information
CircID chr16:68227684|68227827
Strand -
CircType exon
Host Gene ENSG00000072736.17;
Algorism CIRI2;
Sequence CCTCCACACCAAAGACACCCTGGTGCTGCTGCTGGTGAGACTGGTGTCCAAGGCAGGGCCCAGCAGAAACTGCAGCCTGCTGTCTACCAAAGGAGGTACCCGAGTTGGGTACTTTAAAAAAAAAAAAAACCTGCCCTTACCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:68227684|68227827 hsa-miR-15a-5p 0 0 1
chr16:68227684|68227827 hsa-miR-15a-3p 0 0 1
chr16:68227684|68227827 hsa-miR-29a-5p 0 0 1
chr16:68227684|68227827 hsa-miR-29a-3p 0 0 1
chr16:68227684|68227827 hsa-miR-214-5p 0 0 1
chr16:68227684|68227827 hsa-miR-214-3p 0 0 1
chr16:68227684|68227827 hsa-miR-15b-5p 0 0 1
chr16:68227684|68227827 hsa-miR-15b-3p 0 0 1
chr16:68227684|68227827 hsa-miR-195-5p 0 0 1
chr16:68227684|68227827 hsa-miR-195-3p 0 0 1
chr16:68227684|68227827 hsa-miR-29c-5p 0 0 1
chr16:68227684|68227827 hsa-miR-29c-3p 0 0 1
chr16:68227684|68227827 hsa-miR-379-5p 0 0 1
chr16:68227684|68227827 hsa-miR-379-3p 0 0 1
chr16:68227684|68227827 hsa-miR-424-5p 0 0 1
chr16:68227684|68227827 hsa-miR-424-3p 0 0 1
chr16:68227684|68227827 hsa-miR-511-5p 0 0 1
chr16:68227684|68227827 hsa-miR-511-3p 0 0 1
chr16:68227684|68227827 hsa-miR-497-5p 0 0 1
chr16:68227684|68227827 hsa-miR-497-3p 0 0 1
chr16:68227684|68227827 hsa-miR-555 0 0 1
chr16:68227684|68227827 hsa-miR-559 0 0 1
chr16:68227684|68227827 hsa-miR-634 0 0 1
chr16:68227684|68227827 hsa-miR-657 0 0 1
chr16:68227684|68227827 hsa-miR-1226-5p 0 0 1
chr16:68227684|68227827 hsa-miR-1226-3p 0 0 1
chr16:68227684|68227827 hsa-miR-1229-5p 0 0 1
chr16:68227684|68227827 hsa-miR-1229-3p 0 0 1
chr16:68227684|68227827 hsa-miR-548j-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548j-3p 0 0 1
chr16:68227684|68227827 hsa-miR-1291 0 1 1
chr16:68227684|68227827 hsa-miR-548k 0 0 1
chr16:68227684|68227827 hsa-miR-548l 0 0 1
chr16:68227684|68227827 hsa-miR-296-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548b-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548d-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548c-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548a-5p 0 0 1
chr16:68227684|68227827 hsa-miR-548i 0 0 1
chr16:68227684|68227827 hsa-miR-16 0 0 1
chr16:68227684|68227827 hsa-miR-9 0 0 1
chr16:68227684|68227827 hsa-miR-544 0 0 1
chr16:68227684|68227827 hsa-miR-29b 0 0 1
chr16:68227684|68227827 hsa-miR-548h 0 0 1
chr16:68227684|68227827 hsa-miR-4270 1 0 0
chr16:68227684|68227827 hsa-miR-3714 1 0 0
chr16:68227684|68227827 hsa-miR-4656 1 0 0
chr16:68227684|68227827 hsa-miR-4710 1 1 0
chr16:68227684|68227827 hsa-miR-4734 1 0 0
chr16:68227684|68227827 hsa-miR-8054 0 1 0
chr16:68227684|68227827 hsa-miR-9-5p 0 1 0
chr16:68227684|68227827 hsa-miR-3194-3p 1 0 0
chr16:68227684|68227827 hsa-miR-3692-5p 0 1 0
chr16:68227684|68227827 hsa-miR-6727-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6806-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6881-5p 1 1 0
chr16:68227684|68227827 hsa-miR-7855-5p 1 0 0
chr16:68227684|68227827 hsa-miR-2277-3p 1 0 0
chr16:68227684|68227827 hsa-miR-4690-5p 1 1 0
chr16:68227684|68227827 hsa-miR-4638-3p 0 1 0
chr16:68227684|68227827 hsa-miR-6789-5p 1 0 0
chr16:68227684|68227827 hsa-miR-4715-5p 1 0 0
chr16:68227684|68227827 hsa-miR-3065-3p 0 1 0
chr16:68227684|68227827 hsa-miR-3173-5p 0 1 0
chr16:68227684|68227827 hsa-miR-4763-3p 1 0 0
chr16:68227684|68227827 hsa-miR-6743-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6780b-5p 1 0 0
chr16:68227684|68227827 hsa-miR-1909-3p 1 0 0
chr16:68227684|68227827 hsa-miR-4685-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6729-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6777-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6889-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6799-3p 0 1 0
chr16:68227684|68227827 hsa-miR-6736-5p 1 0 0
chr16:68227684|68227827 hsa-miR-6724-5p 0 1 0
chr16:68227684|68227827 hsa-miR-6775-3p 0 1 0
chr16:68227684|68227827 hsa-miR-9851-3p 1 0 0
chr16:68227684|68227827 hsa-miR-137-5p 0 1 0
chr16:68227684|68227827 hsa-miR-3619-5p 1 1 0
chr16:68227684|68227827 hsa-miR-200c-5p 1 1 0
chr16:68227684|68227827 hsa-miR-4524b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:68227684|68227827
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MVLLLVRLVSKAGPSRNCSLLSTKGGTRVGYFKKKKNLPLP
Nucleotide Sequence CTGGTGCTGCTGCTGGTGAGACTGGTGTCCAAGGCAGGGCCCAGCAGAAACTGCAGCCTGCTGTCTACCAAAGGAGGTACCCGAGTTGGGTACTTTAAAAAAAAAAAAAACCTGCCCTTACCC
CircID chr16:68227684|68227827
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MVDSRLQFLLGPALDTSLTSSSTRVSLVWR
Nucleotide Sequence TTGGTAGACAGCAGGCTGCAGTTTCTGCTGGGCCCTGCCTTGGACACCAGTCTCACCAGCAGCAGCACCAGGGTGTCTTTGGTGTGGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab