CircRNA Information

General Information
circRNA Basic Information
CircID chr16:68300362|68300594
Strand +
CircType exon
Host Gene ENSG00000103064.12;
Algorism CIRI2;
Sequence CTTTTAAATCTGAATATCTAAAACAGGGAGCGGTAGTGAAATAGAAGGTTCAGCATTGATTATAAATACCAAGGACTTAAGGCAAGGGAGGAAAAACAAAGTACCTTCTGAACTTAGCTTTCCACTGAGTAATGTTTACTCTTCACAGCACCCACCACAAAAACAAACTACTATCAACAGGATCAATTTTATTAACAACTTGTATCTCTTCTAAGCAGACTCTGTCCGTATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:68300362|68300594 hsa-miR-30a-5p 0 0 1
chr16:68300362|68300594 hsa-miR-30a-3p 0 0 1
chr16:68300362|68300594 hsa-miR-30d-5p 0 0 1
chr16:68300362|68300594 hsa-miR-30d-3p 0 0 1
chr16:68300362|68300594 hsa-miR-30b-5p 0 0 1
chr16:68300362|68300594 hsa-miR-30b-3p 0 0 1
chr16:68300362|68300594 hsa-miR-30e-5p 0 0 1
chr16:68300362|68300594 hsa-miR-30e-3p 0 0 1
chr16:68300362|68300594 hsa-miR-374a-5p 0 0 1
chr16:68300362|68300594 hsa-miR-374a-3p 0 0 1
chr16:68300362|68300594 hsa-miR-381-5p 0 0 1
chr16:68300362|68300594 hsa-miR-381-3p 0 0 1
chr16:68300362|68300594 hsa-miR-382-5p 0 0 1
chr16:68300362|68300594 hsa-miR-382-3p 0 0 1
chr16:68300362|68300594 hsa-miR-510-5p 0 0 1
chr16:68300362|68300594 hsa-miR-510-3p 0 0 1
chr16:68300362|68300594 hsa-miR-569 0 0 1
chr16:68300362|68300594 hsa-miR-623 1 1 1
chr16:68300362|68300594 hsa-miR-640 0 0 1
chr16:68300362|68300594 hsa-miR-300 0 0 1
chr16:68300362|68300594 hsa-miR-541-5p 0 0 1
chr16:68300362|68300594 hsa-miR-541-3p 0 0 1
chr16:68300362|68300594 hsa-miR-374b-5p 0 0 1
chr16:68300362|68300594 hsa-miR-374b-3p 0 0 1
chr16:68300362|68300594 hsa-miR-1238-5p 0 0 1
chr16:68300362|68300594 hsa-miR-1238-3p 0 0 1
chr16:68300362|68300594 hsa-miR-1267 0 0 1
chr16:68300362|68300594 hsa-miR-512-5p 0 0 1
chr16:68300362|68300594 hsa-miR-339-5p 0 0 1
chr16:68300362|68300594 hsa-miR-654-5p 0 0 1
chr16:68300362|68300594 hsa-miR-1244 0 0 1
chr16:68300362|68300594 hsa-miR-1274a 0 0 1
chr16:68300362|68300594 hsa-miR-1274b 0 0 1
chr16:68300362|68300594 hsa-miR-30c 0 0 1
chr16:68300362|68300594 hsa-miR-323-3p 0 0 1
chr16:68300362|68300594 hsa-miR-920 1 0 0
chr16:68300362|68300594 hsa-miR-1182 1 0 0
chr16:68300362|68300594 hsa-miR-1193 1 0 0
chr16:68300362|68300594 hsa-miR-4429 0 1 0
chr16:68300362|68300594 hsa-miR-3978 0 1 0
chr16:68300362|68300594 hsa-miR-4651 1 0 0
chr16:68300362|68300594 hsa-miR-4754 1 0 0
chr16:68300362|68300594 hsa-miR-4784 1 0 0
chr16:68300362|68300594 hsa-miR-6749-3p 1 1 0
chr16:68300362|68300594 hsa-miR-92a-2-5p 1 0 0
chr16:68300362|68300594 hsa-miR-6515-5p 1 0 0
chr16:68300362|68300594 hsa-miR-6741-5p 1 1 0
chr16:68300362|68300594 hsa-miR-6776-5p 1 0 0
chr16:68300362|68300594 hsa-miR-4728-3p 1 1 0
chr16:68300362|68300594 hsa-miR-1915-5p 1 1 0
chr16:68300362|68300594 hsa-miR-6748-5p 0 1 0
chr16:68300362|68300594 hsa-miR-6793-5p 1 0 0
chr16:68300362|68300594 hsa-miR-4655-3p 1 0 0
chr16:68300362|68300594 hsa-miR-3667-3p 1 0 0
chr16:68300362|68300594 hsa-miR-877-5p 1 0 0
chr16:68300362|68300594 hsa-miR-5000-5p 0 1 0
chr16:68300362|68300594 hsa-miR-4778-3p 1 0 0
chr16:68300362|68300594 hsa-miR-335-3p 1 0 0
chr16:68300362|68300594 hsa-miR-4482-3p 0 1 0
chr16:68300362|68300594 hsa-miR-627-5p 0 1 0
chr16:68300362|68300594 hsa-miR-6769b-5p 1 1 0
chr16:68300362|68300594 hsa-miR-6769a-5p 1 1 0
chr16:68300362|68300594 hsa-miR-4685-3p 1 1 0
chr16:68300362|68300594 hsa-miR-6846-5p 1 0 0
chr16:68300362|68300594 hsa-miR-4472 1 0 0
chr16:68300362|68300594 hsa-miR-320a-3p 1 1 0
chr16:68300362|68300594 hsa-miR-320b 1 1 0
chr16:68300362|68300594 hsa-miR-320c 1 1 0
chr16:68300362|68300594 hsa-miR-3059-5p 1 0 0
chr16:68300362|68300594 hsa-miR-4691-5p 1 0 0
chr16:68300362|68300594 hsa-miR-320d 0 1 0
chr16:68300362|68300594 hsa-miR-4676-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:68300362|68300594
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MIINTKDLRQGRKNKVPSELSFPLSNVYSSQHPPQKQTTINRINFINNLYLF
Nucleotide Sequence TTGATTATAAATACCAAGGACTTAAGGCAAGGGAGGAAAAACAAAGTACCTTCTGAACTTAGCTTTCCACTGAGTAATGTTTACTCTTCACAGCACCCACCACAAAAACAAACTACTATCAACAGGATCAATTTTATTAACAACTTGTATCTCTTCTAA
CircID chr16:68300362|68300594
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MFTLHSTHHKNKLLSTGSILLTTCISSKQTLSVC
Nucleotide Sequence ATGTTTACTCTTCACAGCACCCACCACAAAAACAAACTACTATCAACAGGATCAATTTTATTAACAACTTGTATCTCTTCTAAGCAGACTCTGTCCGTATGC
CircID chr16:68300362|68300594
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MFFLPCLKSLVFIINAEPSISLPLPVLDIQI
Nucleotide Sequence TTGTTTTTCCTCCCTTGCCTTAAGTCCTTGGTATTTATAATCAATGCTGAACCTTCTATTTCACTACCGCTCCCTGTTTTAGATATTCAGATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab