CircRNA Information

General Information
circRNA Basic Information
CircID chr16:68645271|68645461
Strand -
CircType exon
Host Gene ENSG00000062038.12;
Algorism CIRI2;
Sequence CTGGCCTCCTCCCGCTGGCTCCCGGGGGCTGCGGTGCTCAAAGGGGCAAGAGCTGAGCGGAACACCGGCCCGCCGTCGCGGCAGCTGCTTCACCCCTCTCTCTGCAGCCATGGGGCTCCCTCGTGGACCTCTCGCGTCTCTCCTCCTTCTCCAGGTACTCCACAGCCTCGCCGTGGCCCCGACCGGGACCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:68645271|68645461 hsa-miR-22-5p 0 0 1
chr16:68645271|68645461 hsa-miR-22-3p 0 0 1
chr16:68645271|68645461 hsa-miR-185-5p 0 0 1
chr16:68645271|68645461 hsa-miR-185-3p 0 0 1
chr16:68645271|68645461 hsa-miR-572 1 1 1
chr16:68645271|68645461 hsa-miR-604 0 0 1
chr16:68645271|68645461 hsa-miR-619-5p 0 0 1
chr16:68645271|68645461 hsa-miR-619-3p 0 0 1
chr16:68645271|68645461 hsa-miR-646 0 1 1
chr16:68645271|68645461 hsa-miR-647 0 0 1
chr16:68645271|68645461 hsa-miR-765 1 0 1
chr16:68645271|68645461 hsa-miR-139-3p 1 0 1
chr16:68645271|68645461 hsa-miR-1225-3p 0 0 1
chr16:68645271|68645461 hsa-miR-485-5p 0 0 1
chr16:68645271|68645461 hsa-miR-609 0 1 0
chr16:68645271|68645461 hsa-miR-663a 1 0 0
chr16:68645271|68645461 hsa-miR-658 1 0 0
chr16:68645271|68645461 hsa-miR-920 0 1 0
chr16:68645271|68645461 hsa-miR-1270 1 0 0
chr16:68645271|68645461 hsa-miR-3154 1 0 0
chr16:68645271|68645461 hsa-miR-3185 1 0 0
chr16:68645271|68645461 hsa-miR-4281 1 1 0
chr16:68645271|68645461 hsa-miR-3652 1 0 0
chr16:68645271|68645461 hsa-miR-3911 0 1 0
chr16:68645271|68645461 hsa-miR-3929 1 0 0
chr16:68645271|68645461 hsa-miR-3943 0 1 0
chr16:68645271|68645461 hsa-miR-4449 1 1 0
chr16:68645271|68645461 hsa-miR-4508 1 0 0
chr16:68645271|68645461 hsa-miR-4510 1 1 0
chr16:68645271|68645461 hsa-miR-4516 1 0 0
chr16:68645271|68645461 hsa-miR-4533 1 0 0
chr16:68645271|68645461 hsa-miR-4534 1 0 0
chr16:68645271|68645461 hsa-miR-3960 1 0 0
chr16:68645271|68645461 hsa-miR-4634 1 0 0
chr16:68645271|68645461 hsa-miR-4644 1 1 0
chr16:68645271|68645461 hsa-miR-4656 1 0 0
chr16:68645271|68645461 hsa-miR-4689 1 0 0
chr16:68645271|68645461 hsa-miR-4706 1 0 0
chr16:68645271|68645461 hsa-miR-4739 1 1 0
chr16:68645271|68645461 hsa-miR-4741 1 0 0
chr16:68645271|68645461 hsa-miR-4767 1 0 0
chr16:68645271|68645461 hsa-miR-4784 0 1 0
chr16:68645271|68645461 hsa-miR-5090 1 0 0
chr16:68645271|68645461 hsa-miR-5703 1 1 0
chr16:68645271|68645461 hsa-miR-5787 1 0 0
chr16:68645271|68645461 hsa-miR-6081 0 1 0
chr16:68645271|68645461 hsa-miR-6090 1 0 0
chr16:68645271|68645461 hsa-miR-6124 1 0 0
chr16:68645271|68645461 hsa-miR-6127 1 1 0
chr16:68645271|68645461 hsa-miR-6133 1 1 0
chr16:68645271|68645461 hsa-miR-6165 1 0 0
chr16:68645271|68645461 hsa-miR-8055 0 1 0
chr16:68645271|68645461 hsa-miR-8085 1 0 0
chr16:68645271|68645461 hsa-miR-8089 1 0 0
chr16:68645271|68645461 hsa-miR-12114 1 0 0
chr16:68645271|68645461 hsa-miR-12118 1 1 0
chr16:68645271|68645461 hsa-miR-12121 1 0 0
chr16:68645271|68645461 hsa-miR-128-1-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6734-5p 1 0 0
chr16:68645271|68645461 hsa-miR-1247-3p 0 1 0
chr16:68645271|68645461 hsa-miR-671-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3150a-3p 1 0 0
chr16:68645271|68645461 hsa-miR-7106-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6894-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4687-3p 1 0 0
chr16:68645271|68645461 hsa-miR-6510-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6833-5p 1 0 0
chr16:68645271|68645461 hsa-miR-7851-3p 1 0 0
chr16:68645271|68645461 hsa-miR-1227-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3663-3p 0 1 0
chr16:68645271|68645461 hsa-miR-7114-5p 0 1 0
chr16:68645271|68645461 hsa-miR-6807-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6880-5p 1 0 0
chr16:68645271|68645461 hsa-miR-7847-3p 1 0 0
chr16:68645271|68645461 hsa-miR-4695-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6746-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4722-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6727-5p 1 1 0
chr16:68645271|68645461 hsa-miR-3187-3p 1 0 0
chr16:68645271|68645461 hsa-miR-432-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6787-3p 0 1 0
chr16:68645271|68645461 hsa-miR-491-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6796-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6829-5p 0 1 0
chr16:68645271|68645461 hsa-miR-3190-3p 1 0 0
chr16:68645271|68645461 hsa-miR-6827-5p 0 1 0
chr16:68645271|68645461 hsa-miR-23a-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6782-5p 0 1 0
chr16:68645271|68645461 hsa-miR-3150b-3p 0 1 0
chr16:68645271|68645461 hsa-miR-6786-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6852-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4640-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3614-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4787-5p 1 0 0
chr16:68645271|68645461 hsa-miR-149-3p 1 0 0
chr16:68645271|68645461 hsa-miR-550b-2-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3158-5p 0 1 0
chr16:68645271|68645461 hsa-miR-490-3p 1 0 0
chr16:68645271|68645461 hsa-miR-4707-5p 1 0 0
chr16:68645271|68645461 hsa-miR-5584-3p 0 1 0
chr16:68645271|68645461 hsa-miR-5587-3p 0 1 0
chr16:68645271|68645461 hsa-miR-10400-5p 1 0 0
chr16:68645271|68645461 hsa-miR-1207-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4763-3p 1 0 0
chr16:68645271|68645461 hsa-miR-6778-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6775-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6743-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6752-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6756-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6803-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6851-5p 1 0 0
chr16:68645271|68645461 hsa-miR-7110-5p 1 0 0
chr16:68645271|68645461 hsa-miR-11181-3p 1 1 0
chr16:68645271|68645461 hsa-miR-1249-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6722-3p 1 0 0
chr16:68645271|68645461 hsa-miR-6751-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6763-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6797-5p 1 0 0
chr16:68645271|68645461 hsa-miR-7111-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4728-5p 1 1 0
chr16:68645271|68645461 hsa-miR-5196-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6780b-5p 1 0 0
chr16:68645271|68645461 hsa-miR-10396b-5p 1 0 0
chr16:68645271|68645461 hsa-miR-328-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4649-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4725-3p 1 0 0
chr16:68645271|68645461 hsa-miR-4726-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4745-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6729-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6738-5p 0 1 0
chr16:68645271|68645461 hsa-miR-6848-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6858-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4723-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6845-5p 1 1 0
chr16:68645271|68645461 hsa-miR-939-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3198 1 0 0
chr16:68645271|68645461 hsa-miR-6758-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6856-5p 1 1 0
chr16:68645271|68645461 hsa-miR-1914-3p 0 1 0
chr16:68645271|68645461 hsa-miR-4665-5p 1 0 0
chr16:68645271|68645461 hsa-miR-3116 1 0 0
chr16:68645271|68645461 hsa-miR-4700-5p 1 0 0
chr16:68645271|68645461 hsa-miR-10398-3p 1 0 0
chr16:68645271|68645461 hsa-miR-4747-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6876-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6891-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6785-5p 1 0 0
chr16:68645271|68645461 hsa-miR-4667-5p 1 0 0
chr16:68645271|68645461 hsa-miR-6791-5p 1 0 0
chr16:68645271|68645461 hsa-miR-550a-3-5p 1 0 0
chr16:68645271|68645461 hsa-miR-550a-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6762-5p 1 1 0
chr16:68645271|68645461 hsa-miR-6805-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:68645271|68645461
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence LASSRWLPGAAVLKGARAERNTGPPSRQLLHPSLCSHGAPSWTSRVSPPSPGTPQPRRGPDRD
Nucleotide Sequence CTGGCCTCCTCCCGCTGGCTCCCGGGGGCTGCGGTGCTCAAAGGGGCAAGAGCTGAGCGGAACACCGGCCCGCCGTCGCGGCAGCTGCTTCACCCCTCTCTCTGCAGCCATGGGGCTCCCTCGTGGACCTCTCGCGTCTCTCCTCCTTCTCCAGGTACTCCACAGCCTCGCCGTGGCCCCGACCGGGAC
CircID chr16:68645271|68645461
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MRCSKGQELSGTPARRRGSCFTPLSAAMGLPRGPLASLLLLQVLHSLAVAPTGT
Nucleotide Sequence CTGCGGTGCTCAAAGGGGCAAGAGCTGAGCGGAACACCGGCCCGCCGTCGCGGCAGCTGCTTCACCCCTCTCTCTGCAGCCATGGGGCTCCCTCGTGGACCTCTCGCGTCTCTCCTCCTTCTCCAGGTACTCCACAGCCTCGCCGTGGCCCCGACCGGGACC
CircID chr16:68645271|68645461
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MQPWGSLVDLSRLSSFSRYSTASPWPRPGP
Nucleotide Sequence CTGCAGCCATGGGGCTCCCTCGTGGACCTCTCGCGTCTCTCCTCCTTCTCCAGGTACTCCACAGCCTCGCCGTGGCCCCGACCGGGACCG
CircID chr16:68645271|68645461
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Nucleotide Sequence CTGGAGAAGGAGGAGAGACGCGAGAGGTCCACGAGGGAGCCCCATGGCTGCAGAGAGAGGGGTGAAGCAGCTGCCGCGACGGCGGGCCGGTGTTCCGCTCAGCTCTTGCCCCTTTGA
CircID chr16:68645271|68645461
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MWSTWRRRRDARGPRGSPMAAERGVKQLPRRRAGVPLSSCPFEHRSPREPAGGGQ
Nucleotide Sequence CTGTGGAGTACCTGGAGAAGGAGGAGAGACGCGAGAGGTCCACGAGGGAGCCCCATGGCTGCAGAGAGAGGGGTGAAGCAGCTGCCGCGACGGCGGGCCGGTGTTCCGCTCAGCTCTTGCCCCTTTGAGCACCGCAGCCCCCGGGAGCCAGCGGGAGGAGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab