CircRNA Information

General Information
circRNA Basic Information
CircID chr16:69118089|69118345
Strand +
CircType exon
Host Gene ENSG00000168802.11;
Algorism CIRI2;
Sequence AGAACAGGGAGATGGACAACCACTTCAAAGAAAGACCCACCGAATGCAGTTTCTGCTTGACTGACTGGGCCTGCAGCTCCCTTCTCCTGGGACTTAGAGGTGGCCAGATTTAAGGCCCCTCTACTCATCCAACTCCCTCTTCACTGGTACTCCCAATCAATCAAAGAACCTCAAAATTTAAACTGATGTGGATGGGAATATGGGAATTAGGGTGGGGGTGGGGGATGAAGGGAAGAAATCACTGTGCTTTGTTCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:69118089|69118345 hsa-miR-204-5p 0 0 1
chr16:69118089|69118345 hsa-miR-204-3p 0 0 1
chr16:69118089|69118345 hsa-miR-205-5p 0 0 1
chr16:69118089|69118345 hsa-miR-205-3p 0 0 1
chr16:69118089|69118345 hsa-miR-211-5p 0 0 1
chr16:69118089|69118345 hsa-miR-211-3p 0 0 1
chr16:69118089|69118345 hsa-miR-217-5p 0 0 1
chr16:69118089|69118345 hsa-miR-217-3p 0 0 1
chr16:69118089|69118345 hsa-miR-558 0 0 1
chr16:69118089|69118345 hsa-miR-571 0 0 1
chr16:69118089|69118345 hsa-miR-573 0 0 1
chr16:69118089|69118345 hsa-miR-588 0 0 1
chr16:69118089|69118345 hsa-miR-623 0 0 1
chr16:69118089|69118345 hsa-miR-665 1 0 1
chr16:69118089|69118345 hsa-miR-920 1 0 1
chr16:69118089|69118345 hsa-miR-1205 0 0 1
chr16:69118089|69118345 hsa-miR-1304-5p 0 0 1
chr16:69118089|69118345 hsa-miR-1304-3p 0 0 1
chr16:69118089|69118345 hsa-miR-1255a 0 0 1
chr16:69118089|69118345 hsa-miR-140-5p 0 0 1
chr16:69118089|69118345 hsa-miR-193a-5p 0 0 1
chr16:69118089|69118345 hsa-miR-339-5p 0 0 1
chr16:69118089|69118345 hsa-miR-423-5p 0 0 1
chr16:69118089|69118345 hsa-miR-330-3p 0 0 1
chr16:69118089|69118345 hsa-miR-361-3p 0 0 1
chr16:69118089|69118345 hsa-miR-509-3p 0 0 1
chr16:69118089|69118345 hsa-miR-513a-3p 0 0 1
chr16:69118089|69118345 hsa-miR-1274a 0 0 1
chr16:69118089|69118345 hsa-miR-128 0 0 1
chr16:69118089|69118345 hsa-miR-1274b 0 0 1
chr16:69118089|69118345 hsa-miR-1255b 0 0 1
chr16:69118089|69118345 hsa-miR-453 0 0 1
chr16:69118089|69118345 hsa-miR-637 1 0 0
chr16:69118089|69118345 hsa-miR-658 1 0 0
chr16:69118089|69118345 hsa-miR-1538 1 0 0
chr16:69118089|69118345 hsa-miR-3185 1 0 0
chr16:69118089|69118345 hsa-miR-4449 1 0 0
chr16:69118089|69118345 hsa-miR-4734 1 0 0
chr16:69118089|69118345 hsa-miR-4739 1 0 0
chr16:69118089|69118345 hsa-miR-6075 1 0 0
chr16:69118089|69118345 hsa-miR-6127 1 0 0
chr16:69118089|69118345 hsa-miR-9900 1 0 0
chr16:69118089|69118345 hsa-miR-6861-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6825-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6894-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6746-5p 1 0 0
chr16:69118089|69118345 hsa-miR-24-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6875-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6874-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6716-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6763-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6809-3p 1 0 0
chr16:69118089|69118345 hsa-miR-7111-3p 1 0 0
chr16:69118089|69118345 hsa-miR-3162-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6793-3p 1 0 0
chr16:69118089|69118345 hsa-miR-214-3p 1 0 0
chr16:69118089|69118345 hsa-miR-5088-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6795-3p 1 0 0
chr16:69118089|69118345 hsa-miR-4746-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6798-3p 1 0 0
chr16:69118089|69118345 hsa-miR-4433b-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6734-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6515-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6729-3p 1 0 0
chr16:69118089|69118345 hsa-miR-1343-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6726-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6743-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6803-5p 1 0 0
chr16:69118089|69118345 hsa-miR-11181-3p 1 0 0
chr16:69118089|69118345 hsa-miR-1249-5p 1 0 0
chr16:69118089|69118345 hsa-miR-4685-3p 1 0 0
chr16:69118089|69118345 hsa-miR-5196-5p 1 0 0
chr16:69118089|69118345 hsa-miR-10526-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6846-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6848-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6858-5p 1 0 0
chr16:69118089|69118345 hsa-miR-6887-5p 1 0 0
chr16:69118089|69118345 hsa-miR-939-5p 1 0 0
chr16:69118089|69118345 hsa-miR-4758-5p 1 0 0
chr16:69118089|69118345 hsa-miR-4747-5p 1 0 0
chr16:69118089|69118345 hsa-miR-5006-3p 1 0 0
chr16:69118089|69118345 hsa-miR-6835-3p 1 0 0
chr16:69118089|69118345 hsa-miR-3681-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:69118089|69118345
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MTGPAAPFSWDLEVARFKAPLLIQLPLHWYSQSIKEPQNLN
Nucleotide Sequence CTGACTGGGCCTGCAGCTCCCTTCTCCTGGGACTTAGAGGTGGCCAGATTTAAGGCCCCTCTACTCATCCAACTCCCTCTTCACTGGTACTCCCAATCAATCAAAGAACCTCAAAATTTAAACTGA
CircID chr16:69118089|69118345
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MDNHFKERPTECSFCLTDWACSSLLLGLRGGQI
Nucleotide Sequence ATGGACAACCACTTCAAAGAAAGACCCACCGAATGCAGTTTCTGCTTGACTGACTGGGCCTGCAGCTCCCTTCTCCTGGGACTTAGAGGTGGCCAGATTTAA
CircID chr16:69118089|69118345
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MVLPINQRTSKFKLMWMGIWELGWGWGMKGRNHCALFG
Nucleotide Sequence CTGGTACTCCCAATCAATCAAAGAACCTCAAAATTTAAACTGATGTGGATGGGAATATGGGAATTAGGGTGGGGGTGGGGGATGAAGGGAAGAAATCACTGTGCTTTGTTCGGC
CircID chr16:69118089|69118345
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MSRGALNLATSKSQEKGAAGPVSQAETAFGGSFFEVVVHLPV
Nucleotide Sequence ATGAGTAGAGGGGCCTTAAATCTGGCCACCTCTAAGTCCCAGGAGAAGGGAGCTGCAGGCCCAGTCAGTCAAGCAGAAACTGCATTCGGTGGGTCTTTCTTTGAAGTGGTTGTCCATCTCCCTGTT
CircID chr16:69118089|69118345
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MQAQSVKQKLHSVGLSLKWLSISLF
Nucleotide Sequence CTGCAGGCCCAGTCAGTCAAGCAGAAACTGCATTCGGTGGGTCTTTCTTTGAAGTGGTTGTCCATCTCCCTGTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab