CircRNA Information

General Information
circRNA Basic Information
CircID chr16:69462462|69462617
Strand +
CircType exon
Host Gene ENSG00000103018.15;
Algorism CIRI2;
Sequence TGGCAGGATTCGAGGAGAGGGCACTTCTGCAGCCCCCAAGCAAGTCTCTAGTTTTCGCCCCAAAGTGGATGCACTTTCTAACTTCAGCAAGGCCTCCTCAGGAGGATTTGCTTTCCGATGTGTAGTAGCGGTACAGGAAACCTAAGAGAACAGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:69462462|69462617 hsa-miR-17-5p 0 0 1
chr16:69462462|69462617 hsa-miR-17-3p 0 0 1
chr16:69462462|69462617 hsa-miR-20a-5p 0 0 1
chr16:69462462|69462617 hsa-miR-20a-3p 0 0 1
chr16:69462462|69462617 hsa-miR-93-5p 0 0 1
chr16:69462462|69462617 hsa-miR-93-3p 0 0 1
chr16:69462462|69462617 hsa-miR-106a-5p 0 0 1
chr16:69462462|69462617 hsa-miR-106a-3p 0 0 1
chr16:69462462|69462617 hsa-miR-106b-5p 0 0 1
chr16:69462462|69462617 hsa-miR-106b-3p 0 0 1
chr16:69462462|69462617 hsa-miR-20b-5p 0 0 1
chr16:69462462|69462617 hsa-miR-20b-3p 0 0 1
chr16:69462462|69462617 hsa-miR-519d-5p 0 0 1
chr16:69462462|69462617 hsa-miR-519d-3p 0 0 1
chr16:69462462|69462617 hsa-miR-298 0 0 1
chr16:69462462|69462617 hsa-miR-1200 0 0 1
chr16:69462462|69462617 hsa-miR-1275 0 0 1
chr16:69462462|69462617 hsa-miR-486-5p 0 1 1
chr16:69462462|69462617 hsa-miR-324-5p 0 0 1
chr16:69462462|69462617 hsa-miR-628-5p 0 0 1
chr16:69462462|69462617 hsa-miR-519b-3p 0 1 1
chr16:69462462|69462617 hsa-miR-519c-3p 0 1 1
chr16:69462462|69462617 hsa-miR-519a 0 0 1
chr16:69462462|69462617 hsa-miR-637 1 0 0
chr16:69462462|69462617 hsa-miR-1303 1 0 0
chr16:69462462|69462617 hsa-miR-3142 0 1 0
chr16:69462462|69462617 hsa-miR-3196 1 0 0
chr16:69462462|69462617 hsa-miR-4327 1 0 0
chr16:69462462|69462617 hsa-miR-3978 1 1 0
chr16:69462462|69462617 hsa-miR-4689 0 1 0
chr16:69462462|69462617 hsa-miR-5572 1 0 0
chr16:69462462|69462617 hsa-miR-8083 1 0 0
chr16:69462462|69462617 hsa-miR-12126 1 0 0
chr16:69462462|69462617 hsa-miR-6892-3p 0 1 0
chr16:69462462|69462617 hsa-miR-6089 1 0 0
chr16:69462462|69462617 hsa-miR-3180-3p 1 0 0
chr16:69462462|69462617 hsa-miR-520g-3p 0 1 0
chr16:69462462|69462617 hsa-miR-6829-5p 0 1 0
chr16:69462462|69462617 hsa-miR-7109-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6789-5p 1 0 0
chr16:69462462|69462617 hsa-miR-7156-3p 1 0 0
chr16:69462462|69462617 hsa-miR-3158-5p 0 1 0
chr16:69462462|69462617 hsa-miR-6878-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6877-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6889-3p 0 1 0
chr16:69462462|69462617 hsa-miR-7158-3p 1 0 0
chr16:69462462|69462617 hsa-miR-371b-3p 0 1 0
chr16:69462462|69462617 hsa-miR-329-5p 0 1 0
chr16:69462462|69462617 hsa-miR-7844-5p 0 1 0
chr16:69462462|69462617 hsa-miR-6812-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6816-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6870-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6803-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6819-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6751-5p 1 0 0
chr16:69462462|69462617 hsa-miR-4649-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6729-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6846-5p 0 1 0
chr16:69462462|69462617 hsa-miR-6848-5p 1 1 0
chr16:69462462|69462617 hsa-miR-6858-5p 0 1 0
chr16:69462462|69462617 hsa-miR-365a-5p 1 1 0
chr16:69462462|69462617 hsa-miR-365b-5p 1 0 0
chr16:69462462|69462617 hsa-miR-6744-3p 1 0 0
chr16:69462462|69462617 hsa-miR-515-3p 0 1 0
chr16:69462462|69462617 hsa-miR-373-3p 1 1 0
chr16:69462462|69462617 hsa-miR-520d-3p 0 1 0
chr16:69462462|69462617 hsa-miR-519e-3p 0 1 0
chr16:69462462|69462617 hsa-miR-520e-3p 0 1 0
chr16:69462462|69462617 hsa-miR-519a-3p 0 1 0
chr16:69462462|69462617 hsa-miR-526b-3p 0 1 0
chr16:69462462|69462617 hsa-miR-520a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:69462462|69462617
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MQPPSKSLVFAPKWMHFLTSARPPQEDLLSDV
Nucleotide Sequence CTGCAGCCCCCAAGCAAGTCTCTAGTTTTCGCCCCAAAGTGGATGCACTTTCTAACTTCAGCAAGGCCTCCTCAGGAGGATTTGCTTTCCGATGTGTAG
CircID chr16:69462462|69462617
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MLKLESASTLGRKLETCLGAAEVPSPRILP
Nucleotide Sequence TTGCTGAAGTTAGAAAGTGCATCCACTTTGGGGCGAAAACTAGAGACTTGCTTGGGGGCTGCAGAAGTGCCCTCTCCTCGAATCCTGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab