CircRNA Information

General Information
circRNA Basic Information
CircID chr16:70372466|70372691
Strand -
CircType exon
Host Gene ENSG00000168872.14;
Algorism CIRI2;
Sequence AAGTGTTTCTCCTGCCCTTGGGGCTGTCTTCCTTCTCCTGAAATCCAGAGACTTTCTTGCTCATCCCTTCTCCCTTTCACTTCTGTTCTCTGCTGCAGAAAGCAGACTTGCATATCCCTGATGAGCAGCTCGGCTACTTTTGTAAACTTCAGATTTGGAGAGAAACACGAAAGTCTGAATCCTGACCCCTTGAGAGAGAGTGATCTGGCGAGGGCCGATGAAGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:70372466|70372691 hsa-miR-107 0 0 1
chr16:70372466|70372691 hsa-miR-205-5p 0 0 1
chr16:70372466|70372691 hsa-miR-205-3p 0 0 1
chr16:70372466|70372691 hsa-miR-326 0 0 1
chr16:70372466|70372691 hsa-miR-488-5p 0 0 1
chr16:70372466|70372691 hsa-miR-488-3p 0 0 1
chr16:70372466|70372691 hsa-miR-558 0 0 1
chr16:70372466|70372691 hsa-miR-562 0 0 1
chr16:70372466|70372691 hsa-miR-593-5p 0 0 1
chr16:70372466|70372691 hsa-miR-593-3p 0 0 1
chr16:70372466|70372691 hsa-miR-922 1 1 1
chr16:70372466|70372691 hsa-miR-1205 0 0 1
chr16:70372466|70372691 hsa-miR-1290 0 0 1
chr16:70372466|70372691 hsa-miR-1255a 1 1 1
chr16:70372466|70372691 hsa-miR-548n 0 0 1
chr16:70372466|70372691 hsa-miR-1252-5p 0 0 1
chr16:70372466|70372691 hsa-miR-1252-3p 0 0 1
chr16:70372466|70372691 hsa-miR-513c-5p 0 0 1
chr16:70372466|70372691 hsa-miR-513c-3p 0 0 1
chr16:70372466|70372691 hsa-miR-1184 0 0 1
chr16:70372466|70372691 hsa-miR-767-3p 0 0 1
chr16:70372466|70372691 hsa-miR-524-5p 0 0 1
chr16:70372466|70372691 hsa-miR-330-5p 0 0 1
chr16:70372466|70372691 hsa-miR-876-5p 0 0 1
chr16:70372466|70372691 hsa-miR-515-5p 0 0 1
chr16:70372466|70372691 hsa-miR-520d-5p 0 0 1
chr16:70372466|70372691 hsa-miR-103 0 0 1
chr16:70372466|70372691 hsa-miR-1255b 0 0 1
chr16:70372466|70372691 hsa-miR-7 0 0 1
chr16:70372466|70372691 hsa-miR-544 0 0 1
chr16:70372466|70372691 hsa-miR-3138 1 0 0
chr16:70372466|70372691 hsa-miR-3154 1 1 0
chr16:70372466|70372691 hsa-miR-3919 0 1 0
chr16:70372466|70372691 hsa-miR-4434 0 1 0
chr16:70372466|70372691 hsa-miR-4516 1 1 0
chr16:70372466|70372691 hsa-miR-4537 1 0 0
chr16:70372466|70372691 hsa-miR-4663 1 0 0
chr16:70372466|70372691 hsa-miR-4739 1 0 0
chr16:70372466|70372691 hsa-miR-5706 0 1 0
chr16:70372466|70372691 hsa-miR-6127 1 0 0
chr16:70372466|70372691 hsa-miR-6133 1 0 0
chr16:70372466|70372691 hsa-miR-8085 1 0 0
chr16:70372466|70372691 hsa-miR-12128 0 1 0
chr16:70372466|70372691 hsa-miR-4433b-3p 1 0 0
chr16:70372466|70372691 hsa-miR-4433a-3p 1 1 0
chr16:70372466|70372691 hsa-miR-671-5p 1 0 0
chr16:70372466|70372691 hsa-miR-7106-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6894-5p 1 0 0
chr16:70372466|70372691 hsa-miR-1236-5p 1 0 0
chr16:70372466|70372691 hsa-miR-5187-5p 1 1 0
chr16:70372466|70372691 hsa-miR-6757-5p 0 1 0
chr16:70372466|70372691 hsa-miR-6873-5p 1 1 0
chr16:70372466|70372691 hsa-miR-6880-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6746-5p 1 1 0
chr16:70372466|70372691 hsa-miR-3677-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6730-5p 1 0 0
chr16:70372466|70372691 hsa-miR-7160-5p 1 0 0
chr16:70372466|70372691 hsa-miR-3189-5p 1 0 0
chr16:70372466|70372691 hsa-miR-3605-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6829-5p 1 0 0
chr16:70372466|70372691 hsa-miR-4655-3p 1 1 0
chr16:70372466|70372691 hsa-miR-3190-3p 1 0 0
chr16:70372466|70372691 hsa-miR-6798-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6770-5p 0 1 0
chr16:70372466|70372691 hsa-miR-6760-5p 1 1 0
chr16:70372466|70372691 hsa-miR-6782-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6803-3p 1 1 0
chr16:70372466|70372691 hsa-miR-6847-5p 1 1 0
chr16:70372466|70372691 hsa-miR-3202 1 1 0
chr16:70372466|70372691 hsa-miR-6824-5p 1 0 0
chr16:70372466|70372691 hsa-miR-3925-5p 0 1 0
chr16:70372466|70372691 hsa-miR-5010-5p 1 0 0
chr16:70372466|70372691 hsa-miR-4773 0 1 0
chr16:70372466|70372691 hsa-miR-6832-5p 0 1 0
chr16:70372466|70372691 hsa-miR-6814-5p 1 1 0
chr16:70372466|70372691 hsa-miR-5699-5p 1 1 0
chr16:70372466|70372691 hsa-miR-499b-5p 0 1 0
chr16:70372466|70372691 hsa-miR-1207-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6812-5p 1 0 0
chr16:70372466|70372691 hsa-miR-11181-3p 1 1 0
chr16:70372466|70372691 hsa-miR-6788-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6797-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6879-5p 0 1 0
chr16:70372466|70372691 hsa-miR-3127-3p 0 1 0
chr16:70372466|70372691 hsa-miR-4728-5p 0 1 0
chr16:70372466|70372691 hsa-miR-5196-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6780b-5p 1 1 0
chr16:70372466|70372691 hsa-miR-4649-5p 1 0 0
chr16:70372466|70372691 hsa-miR-4725-3p 1 0 0
chr16:70372466|70372691 hsa-miR-6729-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6735-5p 0 1 0
chr16:70372466|70372691 hsa-miR-6794-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6858-5p 1 0 0
chr16:70372466|70372691 hsa-miR-4436b-3p 0 1 0
chr16:70372466|70372691 hsa-miR-4758-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6758-5p 1 0 0
chr16:70372466|70372691 hsa-miR-4716-3p 1 0 0
chr16:70372466|70372691 hsa-miR-6750-5p 1 0 0
chr16:70372466|70372691 hsa-miR-6756-3p 0 1 0
chr16:70372466|70372691 hsa-miR-10392-3p 1 0 0
chr16:70372466|70372691 hsa-miR-1255b-5p 1 1 0
chr16:70372466|70372691 hsa-miR-514b-5p 0 1 0
chr16:70372466|70372691 hsa-miR-6839-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:70372466|70372691
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MMSSSATFVNFRFGEKHESLNPDPLRESDLARADEG
Nucleotide Sequence CTGATGAGCAGCTCGGCTACTTTTGTAAACTTCAGATTTGGAGAGAAACACGAAAGTCTGAATCCTGACCCCTTGAGAGAGAGTGATCTGGCGAGGGCCGATGAAGGG
CircID chr16:70372466|70372691
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MKSRDFLAHPFSLSLLFSAAESRLAYP
Nucleotide Sequence CTGAAATCCAGAGACTTTCTTGCTCATCCCTTCTCCCTTTCACTTCTGTTCTCTGCTGCAGAAAGCAGACTTGCATATCCCTGA
CircID chr16:70372466|70372691
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MLIPSPFHFCSLLQKADLHIPDEQLGYFCKLQIWRETRKSES
Nucleotide Sequence TTGCTCATCCCTTCTCCCTTTCACTTCTGTTCTCTGCTGCAGAAAGCAGACTTGCATATCCCTGATGAGCAGCTCGGCTACTTTTGTAAACTTCAGATTTGGAGAGAAACACGAAAGTCTGAATCCTGA
CircID chr16:70372466|70372691
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MKFTKVAELLIRDMQVCFLQQRTEVKGRRDEQESLWISGEGRQPQGQEKH
Nucleotide Sequence CTGAAGTTTACAAAAGTAGCCGAGCTGCTCATCAGGGATATGCAAGTCTGCTTTCTGCAGCAGAGAACAGAAGTGAAAGGGAGAAGGGATGAGCAAGAAAGTCTCTGGATTTCAGGAGAAGGAAGACAGCCCCAAGGGCAGGAGAAACAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab