CircRNA Information

General Information
circRNA Basic Information
CircID chr16:70381035|70381237
Strand -
CircType exon
Host Gene ENSG00000157350.11;
Algorism CIRI2;
Sequence CTGTCCGGAGTTCGGCCCGGGAGCACCCCACCCCGCAGAGGGCGCCACTCCCGGCTTCCTGGAGACGCAGGAAGCCCTGGGGGCGCAGCCATCCCACAGCGCGGCCGAGGTGGGACTGGGGGTCCCGCAGCGACCGCTTTTCTTTGGTGGGTCTGCACGCACCTATCCGGGCAGGCGGGGAAAGGGGCCGGGCGGCCACCTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:70381035|70381237 hsa-miR-604 0 0 1
chr16:70381035|70381237 hsa-miR-608 1 1 1
chr16:70381035|70381237 hsa-miR-639 0 1 1
chr16:70381035|70381237 hsa-miR-647 0 1 1
chr16:70381035|70381237 hsa-miR-766-5p 0 0 1
chr16:70381035|70381237 hsa-miR-766-3p 0 0 1
chr16:70381035|70381237 hsa-miR-744-5p 0 0 1
chr16:70381035|70381237 hsa-miR-744-3p 0 0 1
chr16:70381035|70381237 hsa-miR-665 0 0 1
chr16:70381035|70381237 hsa-miR-671-5p 0 1 1
chr16:70381035|70381237 hsa-miR-566 0 0 1
chr16:70381035|70381237 hsa-miR-361-3p 0 1 1
chr16:70381035|70381237 hsa-miR-1224-3p 0 0 1
chr16:70381035|70381237 hsa-miR-342-5p 0 1 1
chr16:70381035|70381237 hsa-miR-516a-3p 0 0 1
chr16:70381035|70381237 hsa-miR-1260 0 0 1
chr16:70381035|70381237 hsa-miR-1280 0 0 1
chr16:70381035|70381237 hsa-miR-346 1 1 0
chr16:70381035|70381237 hsa-miR-554 0 1 0
chr16:70381035|70381237 hsa-miR-762 1 0 0
chr16:70381035|70381237 hsa-miR-663b 1 0 0
chr16:70381035|70381237 hsa-miR-1260a 0 1 0
chr16:70381035|70381237 hsa-miR-1260b 0 1 0
chr16:70381035|70381237 hsa-miR-4313 1 0 0
chr16:70381035|70381237 hsa-miR-4270 0 1 0
chr16:70381035|70381237 hsa-miR-4292 1 0 0
chr16:70381035|70381237 hsa-miR-3907 1 1 0
chr16:70381035|70381237 hsa-miR-4651 1 1 0
chr16:70381035|70381237 hsa-miR-4734 0 1 0
chr16:70381035|70381237 hsa-miR-9901 1 0 0
chr16:70381035|70381237 hsa-miR-134-3p 0 1 0
chr16:70381035|70381237 hsa-miR-6749-3p 1 0 0
chr16:70381035|70381237 hsa-miR-4665-3p 1 1 0
chr16:70381035|70381237 hsa-miR-1273h-3p 0 1 0
chr16:70381035|70381237 hsa-miR-6728-5p 0 1 0
chr16:70381035|70381237 hsa-miR-7114-5p 1 0 0
chr16:70381035|70381237 hsa-miR-6089 1 1 0
chr16:70381035|70381237 hsa-miR-6742-5p 1 1 0
chr16:70381035|70381237 hsa-miR-6782-5p 1 0 0
chr16:70381035|70381237 hsa-miR-3667-5p 0 1 0
chr16:70381035|70381237 hsa-miR-6821-5p 1 0 0
chr16:70381035|70381237 hsa-miR-6763-3p 1 0 0
chr16:70381035|70381237 hsa-miR-1908-3p 1 1 0
chr16:70381035|70381237 hsa-miR-6789-5p 1 0 0
chr16:70381035|70381237 hsa-miR-6877-5p 0 1 0
chr16:70381035|70381237 hsa-miR-6743-3p 1 0 0
chr16:70381035|70381237 hsa-miR-3158-3p 0 1 0
chr16:70381035|70381237 hsa-miR-1238-3p 0 1 0
chr16:70381035|70381237 hsa-miR-519d-5p 0 1 0
chr16:70381035|70381237 hsa-miR-4746-3p 1 0 0
chr16:70381035|70381237 hsa-miR-3940-3p 1 0 0
chr16:70381035|70381237 hsa-miR-6886-3p 1 0 0
chr16:70381035|70381237 hsa-miR-4749-3p 1 0 0
chr16:70381035|70381237 hsa-miR-6859-3p 0 1 0
chr16:70381035|70381237 hsa-miR-4750-3p 1 0 0
chr16:70381035|70381237 hsa-miR-6789-3p 1 0 0
chr16:70381035|70381237 hsa-miR-500a-3p 1 0 0
chr16:70381035|70381237 hsa-miR-4485-5p 0 1 0
chr16:70381035|70381237 hsa-miR-6812-5p 0 1 0
chr16:70381035|70381237 hsa-miR-6816-5p 1 0 0
chr16:70381035|70381237 hsa-miR-6737-5p 1 1 0
chr16:70381035|70381237 hsa-miR-6756-5p 1 1 0
chr16:70381035|70381237 hsa-miR-6819-5p 1 0 0
chr16:70381035|70381237 hsa-miR-3127-3p 1 0 0
chr16:70381035|70381237 hsa-miR-1915-3p 0 1 0
chr16:70381035|70381237 hsa-miR-3620-5p 1 0 0
chr16:70381035|70381237 hsa-miR-10396a-5p 1 0 0
chr16:70381035|70381237 hsa-miR-4685-5p 0 1 0
chr16:70381035|70381237 hsa-miR-4745-5p 1 0 0
chr16:70381035|70381237 hsa-miR-675-5p 1 0 0
chr16:70381035|70381237 hsa-miR-4769-5p 0 1 0
chr16:70381035|70381237 hsa-miR-3085-5p 1 0 0
chr16:70381035|70381237 hsa-miR-5008-3p 0 1 0
chr16:70381035|70381237 hsa-miR-4664-5p 1 0 0
chr16:70381035|70381237 hsa-miR-6756-3p 1 0 0
chr16:70381035|70381237 hsa-miR-10401-3p 1 0 0
chr16:70381035|70381237 hsa-miR-10392-3p 1 1 0
chr16:70381035|70381237 hsa-miR-5588-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:70381035|70381237
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence LSGVRPGSTPPRRGRHSRLPGDAGSPGGAAIPQRGRGGTGGPAATAFLWWVCTHLSGQAGKGAGRPP
Nucleotide Sequence CTGTCCGGAGTTCGGCCCGGGAGCACCCCACCCCGCAGAGGGCGCCACTCCCGGCTTCCTGGAGACGCAGGAAGCCCTGGGGGCGCAGCCATCCCACAGCGCGGCCGAGGTGGGACTGGGGGTCCCGCAGCGACCGCTTTTCTTTGGTGGGTCTGCACGCACCTATCCGGGCAGGCGGGGAAAGGGGCCGGGCGGCCACCT
CircID chr16:70381035|70381237
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence METQEALGAQPSHSAAEVGLGVPQRPLFFGGSARTYPGRRGKGPGGHL
Nucleotide Sequence CTGGAGACGCAGGAAGCCCTGGGGGCGCAGCCATCCCACAGCGCGGCCGAGGTGGGACTGGGGGTCCCGCAGCGACCGCTTTTCTTTGGTGGGTCTGCACGCACCTATCCGGGCAGGCGGGGAAAGGGGCCGGGCGGCCACCTA
CircID chr16:70381035|70381237
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MAAPPGLPASPGSREWRPLRGGVLPGRTPD
Nucleotide Sequence ATGGCTGCGCCCCCAGGGCTTCCTGCGTCTCCAGGAAGCCGGGAGTGGCGCCCTCTGCGGGGTGGGGTGCTCCCGGGCCGAACTCCGGAC
CircID chr16:70381035|70381237
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MRDPQSHLGRAVGWLRPQGFLRLQEAGSGALCGVGCSRAELRT
Nucleotide Sequence CTGCGGGACCCCCAGTCCCACCTCGGCCGCGCTGTGGGATGGCTGCGCCCCCAGGGCTTCCTGCGTCTCCAGGAAGCCGGGAGTGGCGCCCTCTGCGGGGTGGGGTGCTCCCGGGCCGAACTCCGGACA
CircID chr16:70381035|70381237
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MWDGCAPRASCVSRKPGVAPSAGWGAPGPNSGQ
Nucleotide Sequence CTGTGGGATGGCTGCGCCCCCAGGGCTTCCTGCGTCTCCAGGAAGCCGGGAGTGGCGCCCTCTGCGGGGTGGGGTGCTCCCGGGCCGAACTCCGGACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab