CircRNA Information

General Information
circRNA Basic Information
CircID chr16:71648725|71648931
Strand -
CircType exon
Host Gene ENSG00000040199.17;
Algorism CIRI2;
Sequence CCCACCATTGCACTCCAGCCTGAGCGACTGAGCAAGACTCCGTCTCAAAACAAACAAACAAAAAAAAAACGAACAAACAAAAAGAAATGTAGAGGCAGAATGCCTCTAGCAAGTCCCTACCCCAACCCTGCACAGCCTCCTCCCACACTGTGCCCAGTGGGGCAGTCATAGTGCTGTGTCGAACTCCTCCGGGGGCTCGGTCCGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:71648725|71648931 hsa-miR-122-5p 0 0 1
chr16:71648725|71648931 hsa-miR-122-3p 0 0 1
chr16:71648725|71648931 hsa-miR-130a-5p 0 0 1
chr16:71648725|71648931 hsa-miR-130a-3p 0 0 1
chr16:71648725|71648931 hsa-miR-301a-5p 0 0 1
chr16:71648725|71648931 hsa-miR-301a-3p 0 0 1
chr16:71648725|71648931 hsa-miR-130b-5p 0 0 1
chr16:71648725|71648931 hsa-miR-130b-3p 0 0 1
chr16:71648725|71648931 hsa-miR-375-5p 0 0 1
chr16:71648725|71648931 hsa-miR-375-3p 0 0 1
chr16:71648725|71648931 hsa-miR-431-5p 0 0 1
chr16:71648725|71648931 hsa-miR-431-3p 0 0 1
chr16:71648725|71648931 hsa-miR-484 0 0 1
chr16:71648725|71648931 hsa-miR-612 0 1 1
chr16:71648725|71648931 hsa-miR-454-5p 0 0 1
chr16:71648725|71648931 hsa-miR-454-3p 0 0 1
chr16:71648725|71648931 hsa-miR-765 0 1 1
chr16:71648725|71648931 hsa-miR-541-5p 0 0 1
chr16:71648725|71648931 hsa-miR-541-3p 0 0 1
chr16:71648725|71648931 hsa-miR-301b-5p 0 0 1
chr16:71648725|71648931 hsa-miR-301b-3p 0 0 1
chr16:71648725|71648931 hsa-miR-924 0 1 1
chr16:71648725|71648931 hsa-miR-1178-5p 0 0 1
chr16:71648725|71648931 hsa-miR-1178-3p 0 0 1
chr16:71648725|71648931 hsa-miR-129-5p 0 0 1
chr16:71648725|71648931 hsa-miR-139-3p 0 0 1
chr16:71648725|71648931 hsa-miR-1225-3p 1 0 1
chr16:71648725|71648931 hsa-miR-615-3p 0 0 1
chr16:71648725|71648931 hsa-miR-296-3p 1 1 1
chr16:71648725|71648931 hsa-miR-485-5p 1 0 1
chr16:71648725|71648931 hsa-miR-654-5p 0 0 1
chr16:71648725|71648931 hsa-miR-324-3p 0 0 1
chr16:71648725|71648931 hsa-miR-128 0 0 1
chr16:71648725|71648931 hsa-miR-1285 0 0 1
chr16:71648725|71648931 hsa-miR-637 0 1 0
chr16:71648725|71648931 hsa-miR-1303 1 1 0
chr16:71648725|71648931 hsa-miR-1538 1 0 0
chr16:71648725|71648931 hsa-miR-3135a 1 0 0
chr16:71648725|71648931 hsa-miR-3155a 1 0 0
chr16:71648725|71648931 hsa-miR-3197 1 0 0
chr16:71648725|71648931 hsa-miR-3652 0 1 0
chr16:71648725|71648931 hsa-miR-3917 1 0 0
chr16:71648725|71648931 hsa-miR-3943 0 1 0
chr16:71648725|71648931 hsa-miR-4430 0 1 0
chr16:71648725|71648931 hsa-miR-3135b 0 1 0
chr16:71648725|71648931 hsa-miR-4462 1 0 0
chr16:71648725|71648931 hsa-miR-3155b 1 0 0
chr16:71648725|71648931 hsa-miR-4739 1 0 0
chr16:71648725|71648931 hsa-miR-5188 0 1 0
chr16:71648725|71648931 hsa-miR-5572 0 1 0
chr16:71648725|71648931 hsa-miR-6132 1 0 0
chr16:71648725|71648931 hsa-miR-6133 1 0 0
chr16:71648725|71648931 hsa-miR-6860 0 1 0
chr16:71648725|71648931 hsa-miR-8089 1 0 0
chr16:71648725|71648931 hsa-miR-92a-1-5p 0 1 0
chr16:71648725|71648931 hsa-miR-92a-2-5p 0 1 0
chr16:71648725|71648931 hsa-miR-504-3p 0 1 0
chr16:71648725|71648931 hsa-miR-6765-5p 1 0 0
chr16:71648725|71648931 hsa-miR-7106-5p 0 1 0
chr16:71648725|71648931 hsa-miR-6894-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6799-5p 1 0 0
chr16:71648725|71648931 hsa-miR-4695-5p 0 1 0
chr16:71648725|71648931 hsa-miR-4722-5p 1 0 0
chr16:71648725|71648931 hsa-miR-3189-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6796-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6782-5p 1 0 0
chr16:71648725|71648931 hsa-miR-30b-3p 0 1 0
chr16:71648725|71648931 hsa-miR-3934-3p 1 1 0
chr16:71648725|71648931 hsa-miR-3944-3p 1 0 0
chr16:71648725|71648931 hsa-miR-1229-5p 1 0 0
chr16:71648725|71648931 hsa-miR-5001-3p 0 1 0
chr16:71648725|71648931 hsa-miR-6823-5p 1 1 0
chr16:71648725|71648931 hsa-miR-92b-5p 1 0 0
chr16:71648725|71648931 hsa-miR-4446-3p 1 0 0
chr16:71648725|71648931 hsa-miR-149-3p 1 0 0
chr16:71648725|71648931 hsa-miR-7112-5p 1 0 0
chr16:71648725|71648931 hsa-miR-1225-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6857-3p 1 0 0
chr16:71648725|71648931 hsa-miR-5002-3p 1 1 0
chr16:71648725|71648931 hsa-miR-1233-5p 0 1 0
chr16:71648725|71648931 hsa-miR-1273h-5p 0 1 0
chr16:71648725|71648931 hsa-miR-4763-3p 1 0 0
chr16:71648725|71648931 hsa-miR-6778-5p 1 1 0
chr16:71648725|71648931 hsa-miR-6756-5p 1 0 0
chr16:71648725|71648931 hsa-miR-10401-5p 1 1 0
chr16:71648725|71648931 hsa-miR-11181-3p 1 1 0
chr16:71648725|71648931 hsa-miR-6722-3p 1 0 0
chr16:71648725|71648931 hsa-miR-6779-5p 1 1 0
chr16:71648725|71648931 hsa-miR-4728-5p 1 0 0
chr16:71648725|71648931 hsa-miR-5189-5p 1 1 0
chr16:71648725|71648931 hsa-miR-5196-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6780b-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6846-5p 1 0 0
chr16:71648725|71648931 hsa-miR-6858-5p 1 0 0
chr16:71648725|71648931 hsa-miR-3187-5p 0 1 0
chr16:71648725|71648931 hsa-miR-365a-5p 0 1 0
chr16:71648725|71648931 hsa-miR-365b-5p 0 1 0
chr16:71648725|71648931 hsa-miR-1285-3p 0 1 0
chr16:71648725|71648931 hsa-miR-1914-3p 1 0 0
chr16:71648725|71648931 hsa-miR-7151-3p 1 0 0
chr16:71648725|71648931 hsa-miR-6884-5p 0 1 0
chr16:71648725|71648931 hsa-miR-19a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:71648725|71648931
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MSKTPSQNKQTKKKRTNKKKCRGRMPLASPYPNPAQPPPTLCPVGQS
Nucleotide Sequence CTGAGCAAGACTCCGTCTCAAAACAAACAAACAAAAAAAAAACGAACAAACAAAAAGAAATGTAGAGGCAGAATGCCTCTAGCAAGTCCCTACCCCAACCCTGCACAGCCTCCTCCCACACTGTGCCCAGTGGGGCAGTCATAG
CircID chr16:71648725|71648931
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MHSLLPHCAQWGSHSAVSNSSGGSVR
Nucleotide Sequence CTGCACAGCCTCCTCCCACACTGTGCCCAGTGGGGCAGTCATAGTGCTGTGTCGAACTCCTCCGGGGGCTCGGTCCGA
CircID chr16:71648725|71648931
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MTAPLGTVWEEAVQGWGRDLLEAFCLYISFCLFVFFLFVCFETESCSVAQAGVQWW
Nucleotide Sequence ATGACTGCCCCACTGGGCACAGTGTGGGAGGAGGCTGTGCAGGGTTGGGGTAGGGACTTGCTAGAGGCATTCTGCCTCTACATTTCTTTTTGTTTGTTCGTTTTTTTTTTGTTTGTTTGTTTTGAGACGGAGTCTTGCTCAGTCGCTCAGGCTGGAGTGCAATGGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab