CircRNA Information

General Information
circRNA Basic Information
CircID chr16:71850414|71850703
Strand +
CircType exon
Host Gene ENSG00000224470.6;
Algorism CIRI2;
Sequence CTCTACCCGTGGAGTCTGAGAACCTGAAAACAACTGTCCATCCACCACACATTCTACCACTGGCACCAGTCCCTGGCCTTCACCCTTGCTGTTGGGGGAGTCAAGGGCTTCACTTTCCCGTCTTACTAAATTTCGCTCTCGTGGTCTCTGTCCTCCATTTGCAGCAGCTGCTTCCAGAGCAGACTGGCTCTCCTGAGGGGTAAGAACTGGGCTGGCACCTGCTGGAGGGGTTTCATGCAAAGTATACCCAGCAGGTAGCCTGGACATCTGATAATAAATGGGCATCCGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:71850414|71850703 hsa-miR-198 0 0 1
chr16:71850414|71850703 hsa-miR-208a-5p 0 0 1
chr16:71850414|71850703 hsa-miR-208a-3p 0 0 1
chr16:71850414|71850703 hsa-miR-214-5p 0 0 1
chr16:71850414|71850703 hsa-miR-214-3p 0 0 1
chr16:71850414|71850703 hsa-miR-370-5p 0 0 1
chr16:71850414|71850703 hsa-miR-370-3p 0 0 1
chr16:71850414|71850703 hsa-miR-379-5p 0 0 1
chr16:71850414|71850703 hsa-miR-379-3p 0 0 1
chr16:71850414|71850703 hsa-miR-575 0 1 1
chr16:71850414|71850703 hsa-miR-622 0 1 1
chr16:71850414|71850703 hsa-miR-646 0 1 1
chr16:71850414|71850703 hsa-miR-766-5p 0 0 1
chr16:71850414|71850703 hsa-miR-766-3p 0 0 1
chr16:71850414|71850703 hsa-miR-765 0 0 1
chr16:71850414|71850703 hsa-miR-208b-5p 0 0 1
chr16:71850414|71850703 hsa-miR-208b-3p 0 0 1
chr16:71850414|71850703 hsa-miR-1202 0 1 1
chr16:71850414|71850703 hsa-miR-1299 0 0 1
chr16:71850414|71850703 hsa-miR-671-5p 1 0 1
chr16:71850414|71850703 hsa-miR-361-5p 0 1 1
chr16:71850414|71850703 hsa-miR-361-3p 0 0 1
chr16:71850414|71850703 hsa-miR-483-5p 0 1 1
chr16:71850414|71850703 hsa-miR-767-3p 0 0 1
chr16:71850414|71850703 hsa-miR-875-3p 0 0 1
chr16:71850414|71850703 hsa-miR-338-3p 0 0 1
chr16:71850414|71850703 hsa-miR-644 0 0 1
chr16:71850414|71850703 hsa-miR-129-3p 0 0 1
chr16:71850414|71850703 hsa-miR-147 0 0 1
chr16:71850414|71850703 hsa-miR-608 1 0 0
chr16:71850414|71850703 hsa-miR-612 1 0 0
chr16:71850414|71850703 hsa-miR-657 1 1 0
chr16:71850414|71850703 hsa-miR-762 1 0 0
chr16:71850414|71850703 hsa-miR-764 0 1 0
chr16:71850414|71850703 hsa-miR-1538 1 0 0
chr16:71850414|71850703 hsa-miR-3138 1 0 0
chr16:71850414|71850703 hsa-miR-3165 1 0 0
chr16:71850414|71850703 hsa-miR-3665 0 1 0
chr16:71850414|71850703 hsa-miR-3911 1 0 0
chr16:71850414|71850703 hsa-miR-3135b 1 0 0
chr16:71850414|71850703 hsa-miR-4483 1 0 0
chr16:71850414|71850703 hsa-miR-4484 1 0 0
chr16:71850414|71850703 hsa-miR-2392 1 0 0
chr16:71850414|71850703 hsa-miR-4515 1 0 0
chr16:71850414|71850703 hsa-miR-4530 0 1 0
chr16:71850414|71850703 hsa-miR-1587 1 0 0
chr16:71850414|71850703 hsa-miR-3960 1 0 0
chr16:71850414|71850703 hsa-miR-3972 0 1 0
chr16:71850414|71850703 hsa-miR-4658 1 0 0
chr16:71850414|71850703 hsa-miR-4739 1 0 0
chr16:71850414|71850703 hsa-miR-5685 0 1 0
chr16:71850414|71850703 hsa-miR-6069 1 1 0
chr16:71850414|71850703 hsa-miR-6090 1 0 0
chr16:71850414|71850703 hsa-miR-6126 0 1 0
chr16:71850414|71850703 hsa-miR-6745 1 0 0
chr16:71850414|71850703 hsa-miR-8085 1 0 0
chr16:71850414|71850703 hsa-miR-432-3p 1 0 0
chr16:71850414|71850703 hsa-miR-4433a-3p 1 0 0
chr16:71850414|71850703 hsa-miR-6894-5p 1 1 0
chr16:71850414|71850703 hsa-miR-8071 1 0 0
chr16:71850414|71850703 hsa-miR-1236-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4768-3p 0 1 0
chr16:71850414|71850703 hsa-miR-6089 1 0 0
chr16:71850414|71850703 hsa-miR-6880-5p 1 0 0
chr16:71850414|71850703 hsa-miR-7847-3p 1 0 0
chr16:71850414|71850703 hsa-miR-7154-3p 1 1 0
chr16:71850414|71850703 hsa-miR-1301-3p 1 0 0
chr16:71850414|71850703 hsa-miR-3622b-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6759-5p 1 0 0
chr16:71850414|71850703 hsa-miR-197-5p 0 1 0
chr16:71850414|71850703 hsa-miR-5589-5p 0 1 0
chr16:71850414|71850703 hsa-miR-7845-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6742-5p 1 0 0
chr16:71850414|71850703 hsa-miR-3605-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6748-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6772-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6796-5p 1 0 0
chr16:71850414|71850703 hsa-miR-3190-3p 1 0 0
chr16:71850414|71850703 hsa-miR-3126-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6760-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6782-5p 1 0 0
chr16:71850414|71850703 hsa-miR-3194-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6821-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6810-5p 1 0 0
chr16:71850414|71850703 hsa-miR-5006-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6858-3p 1 0 0
chr16:71850414|71850703 hsa-miR-1226-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4640-5p 1 1 0
chr16:71850414|71850703 hsa-miR-3691-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4650-3p 1 0 0
chr16:71850414|71850703 hsa-miR-4690-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6834-5p 1 0 0
chr16:71850414|71850703 hsa-miR-7843-3p 0 1 0
chr16:71850414|71850703 hsa-miR-2276-3p 1 0 0
chr16:71850414|71850703 hsa-miR-5010-5p 1 0 0
chr16:71850414|71850703 hsa-miR-574-5p 1 0 0
chr16:71850414|71850703 hsa-miR-3120-3p 0 1 0
chr16:71850414|71850703 hsa-miR-671-3p 1 0 0
chr16:71850414|71850703 hsa-miR-518c-5p 0 1 0
chr16:71850414|71850703 hsa-miR-5004-5p 1 1 0
chr16:71850414|71850703 hsa-miR-493-3p 1 0 0
chr16:71850414|71850703 hsa-miR-2681-5p 0 1 0
chr16:71850414|71850703 hsa-miR-3664-3p 0 1 0
chr16:71850414|71850703 hsa-miR-5584-3p 0 1 0
chr16:71850414|71850703 hsa-miR-219b-5p 0 1 0
chr16:71850414|71850703 hsa-miR-3680-3p 0 1 0
chr16:71850414|71850703 hsa-miR-589-5p 0 1 0
chr16:71850414|71850703 hsa-miR-4802-5p 1 1 0
chr16:71850414|71850703 hsa-miR-2116-5p 0 1 0
chr16:71850414|71850703 hsa-miR-4520-3p 0 1 0
chr16:71850414|71850703 hsa-miR-1233-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4763-3p 1 1 0
chr16:71850414|71850703 hsa-miR-6769b-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6778-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6812-5p 1 0 0
chr16:71850414|71850703 hsa-miR-5001-5p 1 1 0
chr16:71850414|71850703 hsa-miR-6743-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6819-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6842-5p 1 0 0
chr16:71850414|71850703 hsa-miR-10401-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6722-3p 1 0 0
chr16:71850414|71850703 hsa-miR-6797-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6879-5p 1 1 0
chr16:71850414|71850703 hsa-miR-3127-3p 0 1 0
chr16:71850414|71850703 hsa-miR-3620-5p 1 0 0
chr16:71850414|71850703 hsa-miR-5196-5p 1 0 0
chr16:71850414|71850703 hsa-miR-1909-3p 1 0 0
chr16:71850414|71850703 hsa-miR-4649-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4726-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4749-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6735-5p 1 1 0
chr16:71850414|71850703 hsa-miR-6777-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6794-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6795-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6887-5p 1 0 0
chr16:71850414|71850703 hsa-miR-6831-5p 0 1 0
chr16:71850414|71850703 hsa-miR-6845-5p 1 0 0
chr16:71850414|71850703 hsa-miR-939-5p 1 1 0
chr16:71850414|71850703 hsa-miR-3085-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4664-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4665-5p 1 1 0
chr16:71850414|71850703 hsa-miR-4472 1 0 0
chr16:71850414|71850703 hsa-miR-6785-5p 1 0 0
chr16:71850414|71850703 hsa-miR-3689d 1 0 0
chr16:71850414|71850703 hsa-miR-3529-5p 1 0 0
chr16:71850414|71850703 hsa-miR-4676-5p 1 1 0
chr16:71850414|71850703 hsa-miR-3619-5p 1 1 0
chr16:71850414|71850703 hsa-miR-4690-3p 0 1 0
chr16:71850414|71850703 hsa-miR-129-1-3p 0 1 0
chr16:71850414|71850703 hsa-miR-129-2-3p 0 1 0
chr16:71850414|71850703 hsa-miR-550a-3p 0 1 0
chr16:71850414|71850703 hsa-miR-4694-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:71850414|71850703
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MSIHHTFYHWHQSLAFTLAVGGVKGFTFPSY
Nucleotide Sequence CTGTCCATCCACCACACATTCTACCACTGGCACCAGTCCCTGGCCTTCACCCTTGCTGTTGGGGGAGTCAAGGGCTTCACTTTCCCGTCTTACTAA
CircID chr16:71850414|71850703
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MSSICSSCFQSRLALLRGKNWAGTCWRGFMQSIPSR
Nucleotide Sequence CTGTCCTCCATTTGCAGCAGCTGCTTCCAGAGCAGACTGGCTCTCCTGAGGGGTAAGAACTGGGCTGGCACCTGCTGGAGGGGTTTCATGCAAAGTATACCCAGCAGGTAG
CircID chr16:71850414|71850703
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MLLGESRASLSRLTKFRSRGLCPPFAAAASRADWLS
Nucleotide Sequence TTGCTGTTGGGGGAGTCAAGGGCTTCACTTTCCCGTCTTACTAAATTTCGCTCTCGTGGTCTCTGTCCTCCATTTGCAGCAGCTGCTTCCAGAGCAGACTGGCTCTCCTGA
CircID chr16:71850414|71850703
ORF Type ORF4
Protein Length 59
Nucleotide Length 180
Protein Sequence MKTTVHPPHILPLAPVPGLHPCCWGSQGLHFPVLLNFALVVSVLHLQQLLPEQTGSPEG
Nucleotide Sequence CTGAAAACAACTGTCCATCCACCACACATTCTACCACTGGCACCAGTCCCTGGCCTTCACCCTTGCTGTTGGGGGAGTCAAGGGCTTCACTTTCCCGTCTTACTAAATTTCGCTCTCGTGGTCTCTGTCCTCCATTTGCAGCAGCTGCTTCCAGAGCAGACTGGCTCTCCTGAGGGGTAA
CircID chr16:71850414|71850703
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MGWHLLEGFHAKYTQQVAWTSDNKWASD
Nucleotide Sequence CTGGGCTGGCACCTGCTGGAGGGGTTTCATGCAAAGTATACCCAGCAGGTAGCCTGGACATCTGATAATAAATGGGCATCCGAC
CircID chr16:71850414|71850703
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MLGILCMKPLQQVPAQFLPLRRASLLWKQLLQMEDRDHESEI
Nucleotide Sequence CTGCTGGGTATACTTTGCATGAAACCCCTCCAGCAGGTGCCAGCCCAGTTCTTACCCCTCAGGAGAGCCAGTCTGCTCTGGAAGCAGCTGCTGCAAATGGAGGACAGAGACCACGAGAGCGAAATTTAG
CircID chr16:71850414|71850703
ORF Type ORF7
Protein Length 95
Nucleotide Length 285
Protein Sequence MPIYYQMSRLPAGYTLHETPPAGASPVLTPQESQSALEAAAANGGQRPRERNLVRRESEALDSPNSKGEGQGLVPVVECVVDGQLFSGSQTPRVE
Nucleotide Sequence ATGCCCATTTATTATCAGATGTCCAGGCTACCTGCTGGGTATACTTTGCATGAAACCCCTCCAGCAGGTGCCAGCCCAGTTCTTACCCCTCAGGAGAGCCAGTCTGCTCTGGAAGCAGCTGCTGCAAATGGAGGACAGAGACCACGAGAGCGAAATTTAGTAAGACGGGAAAGTGAAGCCCTTGACTCCCCCAACAGCAAGGGTGAAGGCCAGGGACTGGTGCCAGTGGTAGAATGTGTGGTGGATGGACAGTTGTTTTCAGGTTCTCAGACTCCACGGGTAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab