CircRNA Information

General Information
circRNA Basic Information
CircID chr16:71854354|71854545
Strand -
CircType exon
Host Gene ENSG00000224470.6;
Algorism CIRI2;
Sequence CTTTCTGTTGCTGTCTCTTGCTGGTGAAGCAATACCAGCAGTTCCTGTAATACCACAATATCGTTCCATGCATATATAACATATTAATACTTGATTTTGCTGAGCTGCAAAGGTATCTGTCATAAAATATGGTCCCCAGGAAAAGAATCTCTGTGCTCTAAATCTCGGTCAGAGCTGTGGCCTCCCCCTTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:71854354|71854545 hsa-miR-26b-5p 0 0 1
chr16:71854354|71854545 hsa-miR-26b-3p 0 0 1
chr16:71854354|71854545 hsa-miR-197-5p 0 0 1
chr16:71854354|71854545 hsa-miR-197-3p 0 0 1
chr16:71854354|71854545 hsa-miR-137-5p 0 0 1
chr16:71854354|71854545 hsa-miR-137-3p 0 0 1
chr16:71854354|71854545 hsa-miR-425-5p 0 0 1
chr16:71854354|71854545 hsa-miR-425-3p 0 0 1
chr16:71854354|71854545 hsa-miR-412-5p 0 0 1
chr16:71854354|71854545 hsa-miR-412-3p 0 0 1
chr16:71854354|71854545 hsa-miR-545-5p 0 0 1
chr16:71854354|71854545 hsa-miR-545-3p 0 0 1
chr16:71854354|71854545 hsa-miR-586 0 0 1
chr16:71854354|71854545 hsa-miR-634 0 0 1
chr16:71854354|71854545 hsa-miR-1301-5p 0 0 1
chr16:71854354|71854545 hsa-miR-1301-3p 0 0 1
chr16:71854354|71854545 hsa-miR-889-5p 0 0 1
chr16:71854354|71854545 hsa-miR-889-3p 0 0 1
chr16:71854354|71854545 hsa-miR-873-5p 0 0 1
chr16:71854354|71854545 hsa-miR-873-3p 0 0 1
chr16:71854354|71854545 hsa-miR-1226-5p 0 0 1
chr16:71854354|71854545 hsa-miR-1226-3p 0 0 1
chr16:71854354|71854545 hsa-miR-1297 0 0 1
chr16:71854354|71854545 hsa-miR-1303 0 0 1
chr16:71854354|71854545 hsa-miR-548p 0 0 1
chr16:71854354|71854545 hsa-miR-138 0 0 1
chr16:71854354|71854545 hsa-miR-26a 0 0 1
chr16:71854354|71854545 hsa-miR-637 1 0 0
chr16:71854354|71854545 hsa-miR-1295a 1 0 0
chr16:71854354|71854545 hsa-miR-4660 0 1 0
chr16:71854354|71854545 hsa-miR-4739 1 0 0
chr16:71854354|71854545 hsa-miR-8089 1 1 0
chr16:71854354|71854545 hsa-miR-12120 1 0 0
chr16:71854354|71854545 hsa-miR-12126 1 0 0
chr16:71854354|71854545 hsa-miR-138-5p 0 1 0
chr16:71854354|71854545 hsa-miR-10b-3p 0 1 0
chr16:71854354|71854545 hsa-miR-6089 1 0 0
chr16:71854354|71854545 hsa-miR-6732-5p 1 0 0
chr16:71854354|71854545 hsa-miR-6798-5p 1 0 0
chr16:71854354|71854545 hsa-miR-5008-5p 1 0 0
chr16:71854354|71854545 hsa-miR-1343-3p 1 1 0
chr16:71854354|71854545 hsa-miR-450a-2-3p 1 0 0
chr16:71854354|71854545 hsa-miR-3191-3p 1 0 0
chr16:71854354|71854545 hsa-miR-4717-5p 0 1 0
chr16:71854354|71854545 hsa-miR-1233-5p 1 0 0
chr16:71854354|71854545 hsa-miR-7111-5p 1 1 0
chr16:71854354|71854545 hsa-miR-1237-5p 1 0 0
chr16:71854354|71854545 hsa-miR-328-5p 1 0 0
chr16:71854354|71854545 hsa-miR-6738-5p 1 0 0
chr16:71854354|71854545 hsa-miR-4723-5p 1 1 0
chr16:71854354|71854545 hsa-miR-6885-5p 1 0 0
chr16:71854354|71854545 hsa-miR-939-5p 1 0 0
chr16:71854354|71854545 hsa-miR-365b-5p 1 0 0
chr16:71854354|71854545 hsa-miR-4716-3p 0 1 0
chr16:71854354|71854545 hsa-miR-6791-5p 1 0 0
chr16:71854354|71854545 hsa-miR-6762-5p 1 0 0
chr16:71854354|71854545 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr16:71854354|71854545
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MILLSCKGICHKIWSPGKESLCSKSRSELWPPPC
Nucleotide Sequence TTGATTTTGCTGAGCTGCAAAGGTATCTGTCATAAAATATGGTCCCCAGGAAAAGAATCTCTGTGCTCTAAATCTCGGTCAGAGCTGTGGCCTCCCCCTTGC

CircID chr16:71854354|71854545
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MTDTFAAQQNQVLICYICMERYCGITGTAGIASPARDSNRK
Nucleotide Sequence ATGACAGATACCTTTGCAGCTCAGCAAAATCAAGTATTAATATGTTATATATGCATGGAACGATATTGTGGTATTACAGGAACTGCTGGTATTGCTTCACCAGCAAGAGACAGCAACAGAAAG

CircID chr16:71854354|71854545
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MGTIFYDRYLCSSAKSSINMLYMHGTILWYYRNCWYCFTSKRQQQK
Nucleotide Sequence CTGGGGACCATATTTTATGACAGATACCTTTGCAGCTCAGCAAAATCAAGTATTAATATGTTATATATGCATGGAACGATATTGTGGTATTACAGGAACTGCTGGTATTGCTTCACCAGCAAGAGACAGCAACAGAAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites