CircRNA Information

General Information
circRNA Basic Information
CircID chr16:72096215|72096431
Strand -
CircType exon
Host Gene ENSG00000140829.10;
Algorism CIRI2;
Sequence TGTCAGGTTGGTGGTCTTATTTGCAAGTCCAAAAGTGCGGCCAGCGAGCAGCATGTCTTCAAGGCTCCTGCTCCCCGCCCTTCATTACTCGGACTGGACTTGCTGGCTTCCCTGAAACGGAGAGAGCGAGAGGAGAAGGACGATGGGGAGGACAAGAAGAAGTCCAAAGTCTCCTCCTACAAGGACTGGGAAGAGAGCAAGGATGACCAGAAGGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:72096215|72096431 hsa-miR-527 0 0 1
chr16:72096215|72096431 hsa-miR-578 0 1 1
chr16:72096215|72096431 hsa-miR-641 0 0 1
chr16:72096215|72096431 hsa-miR-765 0 0 1
chr16:72096215|72096431 hsa-miR-939-5p 0 0 1
chr16:72096215|72096431 hsa-miR-939-3p 0 0 1
chr16:72096215|72096431 hsa-miR-1236-5p 0 0 1
chr16:72096215|72096431 hsa-miR-1236-3p 0 0 1
chr16:72096215|72096431 hsa-miR-1237-5p 0 0 1
chr16:72096215|72096431 hsa-miR-1237-3p 0 0 1
chr16:72096215|72096431 hsa-miR-1248 0 0 1
chr16:72096215|72096431 hsa-miR-671-5p 0 0 1
chr16:72096215|72096431 hsa-miR-502-5p 1 1 1
chr16:72096215|72096431 hsa-miR-362-5p 0 0 1
chr16:72096215|72096431 hsa-miR-518a-5p 0 0 1
chr16:72096215|72096431 hsa-miR-1269 0 0 1
chr16:72096215|72096431 hsa-miR-720 0 0 1
chr16:72096215|72096431 hsa-miR-663 0 0 1
chr16:72096215|72096431 hsa-miR-636 1 0 0
chr16:72096215|72096431 hsa-miR-663a 1 1 0
chr16:72096215|72096431 hsa-miR-762 1 0 0
chr16:72096215|72096431 hsa-miR-3141 0 1 0
chr16:72096215|72096431 hsa-miR-3166 1 0 0
chr16:72096215|72096431 hsa-miR-3196 1 0 0
chr16:72096215|72096431 hsa-miR-3671 0 1 0
chr16:72096215|72096431 hsa-miR-4706 1 1 0
chr16:72096215|72096431 hsa-miR-4767 1 0 0
chr16:72096215|72096431 hsa-miR-4784 0 1 0
chr16:72096215|72096431 hsa-miR-6081 0 1 0
chr16:72096215|72096431 hsa-miR-6165 0 1 0
chr16:72096215|72096431 hsa-miR-8058 0 1 0
chr16:72096215|72096431 hsa-miR-12128 0 1 0
chr16:72096215|72096431 hsa-miR-154-5p 1 0 0
chr16:72096215|72096431 hsa-miR-6881-3p 0 1 0
chr16:72096215|72096431 hsa-miR-3692-5p 1 0 0
chr16:72096215|72096431 hsa-miR-6089 1 0 0
chr16:72096215|72096431 hsa-miR-6727-5p 1 0 0
chr16:72096215|72096431 hsa-miR-1915-5p 1 0 0
chr16:72096215|72096431 hsa-miR-877-3p 1 0 0
chr16:72096215|72096431 hsa-miR-6868-3p 1 1 0
chr16:72096215|72096431 hsa-miR-6827-5p 0 1 0
chr16:72096215|72096431 hsa-miR-4793-5p 1 0 0
chr16:72096215|72096431 hsa-miR-4786-3p 1 1 0
chr16:72096215|72096431 hsa-miR-5004-3p 0 1 0
chr16:72096215|72096431 hsa-miR-1228-5p 1 0 0
chr16:72096215|72096431 hsa-miR-3667-3p 1 0 0
chr16:72096215|72096431 hsa-miR-6861-3p 1 0 0
chr16:72096215|72096431 hsa-miR-6809-3p 1 1 0
chr16:72096215|72096431 hsa-miR-7111-3p 0 1 0
chr16:72096215|72096431 hsa-miR-6830-3p 1 1 0
chr16:72096215|72096431 hsa-miR-5196-3p 1 0 0
chr16:72096215|72096431 hsa-miR-211-5p 1 0 0
chr16:72096215|72096431 hsa-miR-423-5p 0 1 0
chr16:72096215|72096431 hsa-miR-6828-3p 1 0 0
chr16:72096215|72096431 hsa-miR-500a-5p 1 0 0
chr16:72096215|72096431 hsa-miR-6826-3p 1 0 0
chr16:72096215|72096431 hsa-miR-4529-3p 0 1 0
chr16:72096215|72096431 hsa-miR-6883-3p 0 1 0
chr16:72096215|72096431 hsa-miR-204-5p 1 0 0
chr16:72096215|72096431 hsa-miR-6734-3p 1 1 0
chr16:72096215|72096431 hsa-miR-431-3p 1 0 0
chr16:72096215|72096431 hsa-miR-6787-5p 1 1 0
chr16:72096215|72096431 hsa-miR-6816-5p 1 1 0
chr16:72096215|72096431 hsa-miR-6743-5p 1 0 0
chr16:72096215|72096431 hsa-miR-320a-5p 1 1 0
chr16:72096215|72096431 hsa-miR-10396b-5p 1 1 0
chr16:72096215|72096431 hsa-miR-328-5p 1 0 0
chr16:72096215|72096431 hsa-miR-4749-5p 0 1 0
chr16:72096215|72096431 hsa-miR-6777-5p 0 1 0
chr16:72096215|72096431 hsa-miR-6889-5p 0 1 0
chr16:72096215|72096431 hsa-miR-5009-5p 0 1 0
chr16:72096215|72096431 hsa-miR-6891-3p 0 1 0
chr16:72096215|72096431 hsa-miR-487b-5p 1 1 0
chr16:72096215|72096431 hsa-miR-6824-3p 1 0 0
chr16:72096215|72096431 hsa-miR-487a-5p 1 1 0
chr16:72096215|72096431 hsa-miR-3617-5p 0 1 0
chr16:72096215|72096431 hsa-miR-6764-3p 1 0 0
chr16:72096215|72096431 hsa-miR-6505-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:72096215|72096431
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MDLLASLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKD
Nucleotide Sequence CTGGACTTGCTGGCTTCCCTGAAACGGAGAGAGCGAGAGGAGAAGGACGATGGGGAGGACAAGAAGAAGTCCAAAGTCTCCTCCTACAAGGACTGGGAAGAGAGCAAGGATGACCAGAAGGAT
CircID chr16:72096215|72096431
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MVVLFASPKVRPASSMSSRLLLPALHYSDWTCWLP
Nucleotide Sequence TTGGTGGTCTTATTTGCAAGTCCAAAAGTGCGGCCAGCGAGCAGCATGTCTTCAAGGCTCCTGCTCCCCGCCCTTCATTACTCGGACTGGACTTGCTGGCTTCCCTGA
CircID chr16:72096215|72096431
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MGRTRRSPKSPPTRTGKRARMTRRM
Nucleotide Sequence ATGGGGAGGACAAGAAGAAGTCCAAAGTCTCCTCCTACAAGGACTGGGAAGAGAGCAAGGATGACCAGAAGGATG
CircID chr16:72096215|72096431
ORF Type ORF4
Protein Length 61
Nucleotide Length 186
Protein Sequence MQVQKCGQRAACLQGSCSPPFITRTGLAGFPETERARGEGRWGGQEEVQSLLLQGLGREQG
Nucleotide Sequence TTGCAAGTCCAAAAGTGCGGCCAGCGAGCAGCATGTCTTCAAGGCTCCTGCTCCCCGCCCTTCATTACTCGGACTGGACTTGCTGGCTTCCCTGAAACGGAGAGAGCGAGAGGAGAAGGACGATGGGGAGGACAAGAAGAAGTCCAAAGTCTCCTCCTACAAGGACTGGGAAGAGAGCAAGGATGA
CircID chr16:72096215|72096431
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MVILALFPVLVGGDFGLLLVLPIVLLLSLSPFQGSQQVQSE
Nucleotide Sequence CTGGTCATCCTTGCTCTCTTCCCAGTCCTTGTAGGAGGAGACTTTGGACTTCTTCTTGTCCTCCCCATCGTCCTTCTCCTCTCGCTCTCTCCGTTTCAGGGAAGCCAGCAAGTCCAGTCCGAGTAA
CircID chr16:72096215|72096431
ORF Type ORF6
Protein Length 54
Nucleotide Length 165
Protein Sequence MDFFLSSPSSFSSRSLRFREASKSSPSNEGRGAGALKTCCSLAALLDLQIRPPT
Nucleotide Sequence TTGGACTTCTTCTTGTCCTCCCCATCGTCCTTCTCCTCTCGCTCTCTCCGTTTCAGGGAAGCCAGCAAGTCCAGTCCGAGTAATGAAGGGCGGGGAGCAGGAGCCTTGAAGACATGCTGCTCGCTGGCCGCACTTTTGGACTTGCAAATAAGACCACCAACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab