CircRNA Information

General Information
circRNA Basic Information
CircID chr16:721598|721790
Strand +
CircType exon
Host Gene ENSG00000103254.8;
Algorism CIRI2;
Sequence CGAGAGTGTGGGAACCAGGATGTGGGCAGGGGCGCCCGCCAGCAGGTGGGCGGTGTGGGGCGGCGAAGACCCAGACGCAGGCACTTACGATCCTGCCGTCGCCAGAGCCCAGATCCACCGTTTTTCCGGGGCGTCCTCGCAGCAGCGACAACACGTGCTCCACCTGCCGCGCGCTCGCGCCGACGTAGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:721598|721790 hsa-miR-302a-5p 0 0 1
chr16:721598|721790 hsa-miR-302a-3p 0 0 1
chr16:721598|721790 hsa-miR-302b-5p 0 0 1
chr16:721598|721790 hsa-miR-302b-3p 0 0 1
chr16:721598|721790 hsa-miR-302c-5p 0 0 1
chr16:721598|721790 hsa-miR-302c-3p 0 0 1
chr16:721598|721790 hsa-miR-302d-5p 0 0 1
chr16:721598|721790 hsa-miR-302d-3p 0 0 1
chr16:721598|721790 hsa-miR-370-5p 0 0 1
chr16:721598|721790 hsa-miR-370-3p 0 0 1
chr16:721598|721790 hsa-miR-372-5p 0 0 1
chr16:721598|721790 hsa-miR-372-3p 0 0 1
chr16:721598|721790 hsa-miR-373-5p 0 0 1
chr16:721598|721790 hsa-miR-373-3p 0 0 1
chr16:721598|721790 hsa-miR-520e-5p 0 0 1
chr16:721598|721790 hsa-miR-520e-3p 0 0 1
chr16:721598|721790 hsa-miR-519e-5p 0 0 1
chr16:721598|721790 hsa-miR-519e-3p 0 0 1
chr16:721598|721790 hsa-miR-520b-5p 0 0 1
chr16:721598|721790 hsa-miR-520b-3p 0 0 1
chr16:721598|721790 hsa-miR-553 0 1 1
chr16:721598|721790 hsa-miR-611 1 1 1
chr16:721598|721790 hsa-miR-612 0 0 1
chr16:721598|721790 hsa-miR-639 0 1 1
chr16:721598|721790 hsa-miR-760 1 1 1
chr16:721598|721790 hsa-miR-302e 0 0 1
chr16:721598|721790 hsa-miR-193a-5p 0 1 1
chr16:721598|721790 hsa-miR-1224-3p 0 0 1
chr16:721598|721790 hsa-miR-188-3p 0 0 1
chr16:721598|721790 hsa-miR-515-3p 0 1 1
chr16:721598|721790 hsa-miR-520d-3p 0 0 1
chr16:721598|721790 hsa-miR-519b-3p 0 0 1
chr16:721598|721790 hsa-miR-519c-3p 0 0 1
chr16:721598|721790 hsa-miR-520a-3p 0 0 1
chr16:721598|721790 hsa-miR-520c-3p 0 0 1
chr16:721598|721790 hsa-miR-1260 0 0 1
chr16:721598|721790 hsa-miR-550 0 0 1
chr16:721598|721790 hsa-miR-1285 0 0 1
chr16:721598|721790 hsa-miR-1273 0 0 1
chr16:721598|721790 hsa-miR-220a 0 0 1
chr16:721598|721790 hsa-miR-663 0 0 1
chr16:721598|721790 hsa-miR-519a 0 0 1
chr16:721598|721790 hsa-miR-346 1 0 0
chr16:721598|721790 hsa-miR-636 1 0 0
chr16:721598|721790 hsa-miR-638 1 0 0
chr16:721598|721790 hsa-miR-661 1 0 0
chr16:721598|721790 hsa-miR-1268a 1 0 0
chr16:721598|721790 hsa-miR-1469 1 1 0
chr16:721598|721790 hsa-miR-3131 1 1 0
chr16:721598|721790 hsa-miR-3193 0 1 0
chr16:721598|721790 hsa-miR-3665 0 1 0
chr16:721598|721790 hsa-miR-1268b 1 0 0
chr16:721598|721790 hsa-miR-378g 0 1 0
chr16:721598|721790 hsa-miR-4449 1 0 0
chr16:721598|721790 hsa-miR-4467 1 0 0
chr16:721598|721790 hsa-miR-4479 1 1 0
chr16:721598|721790 hsa-miR-3960 1 0 0
chr16:721598|721790 hsa-miR-4634 0 1 0
chr16:721598|721790 hsa-miR-4674 1 1 0
chr16:721598|721790 hsa-miR-4721 1 0 0
chr16:721598|721790 hsa-miR-4737 0 1 0
chr16:721598|721790 hsa-miR-4767 1 1 0
chr16:721598|721790 hsa-miR-6068 1 0 0
chr16:721598|721790 hsa-miR-9899 0 1 0
chr16:721598|721790 hsa-miR-12114 0 1 0
chr16:721598|721790 hsa-miR-12115 1 0 0
chr16:721598|721790 hsa-miR-671-5p 1 0 0
chr16:721598|721790 hsa-miR-6861-5p 1 0 0
chr16:721598|721790 hsa-miR-210-5p 1 1 0
chr16:721598|721790 hsa-miR-6880-5p 1 0 0
chr16:721598|721790 hsa-miR-1343-3p 0 1 0
chr16:721598|721790 hsa-miR-6786-5p 1 0 0
chr16:721598|721790 hsa-miR-4793-5p 0 1 0
chr16:721598|721790 hsa-miR-4763-5p 1 0 0
chr16:721598|721790 hsa-miR-1909-5p 1 0 0
chr16:721598|721790 hsa-miR-6786-3p 1 0 0
chr16:721598|721790 hsa-miR-339-5p 1 0 0
chr16:721598|721790 hsa-miR-4707-5p 1 0 0
chr16:721598|721790 hsa-miR-6743-3p 1 0 0
chr16:721598|721790 hsa-miR-4758-3p 0 1 0
chr16:721598|721790 hsa-miR-6752-3p 1 1 0
chr16:721598|721790 hsa-miR-4632-3p 0 1 0
chr16:721598|721790 hsa-miR-767-3p 0 1 0
chr16:721598|721790 hsa-miR-1249-3p 0 1 0
chr16:721598|721790 hsa-miR-6789-3p 0 1 0
chr16:721598|721790 hsa-miR-1298-3p 0 1 0
chr16:721598|721790 hsa-miR-10400-5p 1 0 0
chr16:721598|721790 hsa-miR-1207-5p 1 0 0
chr16:721598|721790 hsa-miR-4763-3p 1 0 0
chr16:721598|721790 hsa-miR-5189-5p 1 0 0
chr16:721598|721790 hsa-miR-10394-3p 1 0 0
chr16:721598|721790 hsa-miR-1271-3p 0 1 0
chr16:721598|721790 hsa-miR-4722-3p 1 0 0
chr16:721598|721790 hsa-miR-6893-3p 0 1 0
chr16:721598|721790 hsa-miR-10401-3p 1 0 0
chr16:721598|721790 hsa-miR-6801-3p 1 1 0
chr16:721598|721790 hsa-miR-6810-3p 1 1 0
chr16:721598|721790 hsa-miR-10400-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:721598|721790
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MWAGAPASRWAVWGGEDPDAGTYDPAVARAQIHRFSGASSQQRQHVLHLPRARADVGH
Nucleotide Sequence ATGTGGGCAGGGGCGCCCGCCAGCAGGTGGGCGGTGTGGGGCGGCGAAGACCCAGACGCAGGCACTTACGATCCTGCCGTCGCCAGAGCCCAGATCCACCGTTTTTCCGGGGCGTCCTCGCAGCAGCGACAACACGTGCTCCACCTGCCGCGCGCTCGCGCCGACGTAGGGCAC
CircID chr16:721598|721790
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MPSPEPRSTVFPGRPRSSDNTCSTCRALAPT
Nucleotide Sequence CTGCCGTCGCCAGAGCCCAGATCCACCGTTTTTCCGGGGCGTCCTCGCAGCAGCGACAACACGTGCTCCACCTGCCGCGCGCTCGCGCCGACGTAG
CircID chr16:721598|721790
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MSLLRGRPGKTVDLGSGDGRIVSACVWVFAAPHRPPAGGRPCPHPGSHTL
Nucleotide Sequence TTGTCGCTGCTGCGAGGACGCCCCGGAAAAACGGTGGATCTGGGCTCTGGCGACGGCAGGATCGTAAGTGCCTGCGTCTGGGTCTTCGCCGCCCCACACCGCCCACCTGCTGGCGGGCGCCCCTGCCCACATCCTGGTTCCCACACTCTC
CircID chr16:721598|721790
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MRLGLRRPTPPTCWRAPLPTSWFPHS
Nucleotide Sequence CTGCGTCTGGGTCTTCGCCGCCCCACACCGCCCACCTGCTGGCGGGCGCCCCTGCCCACATCCTGGTTCCCACACTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab