CircRNA Information

General Information
circRNA Basic Information
CircID chr16:74923926|74938266
Strand -
CircType exon
Host Gene ENSG00000103091.14;
Algorism find_circ;CIRI2;CIRC
Sequence AAACCCAGTACAGCAGTGGAATATCTAGCCGCCCACCTCTCCAAAATCCATGGCCTGGACTGGCACCCAGACAGCGAGCACATTCTTGCTACCTCCAGTCAAGACAATTCTGTGAAGTTCTGGGATTACCGCCAGCCTCGGAAATACCTCAATATTCTTCCTTGCCAGGTGCCTGTCTGGAAGGCCAGATACACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:74923926|74938266 hsa-miR-422a 0 1 1
chr16:74923926|74938266 hsa-miR-1231 0 1 1
chr16:74923926|74938266 hsa-miR-1202 0 0 1
chr16:74923926|74938266 hsa-miR-1299 0 0 1
chr16:74923926|74938266 hsa-miR-1288-5p 0 0 1
chr16:74923926|74938266 hsa-miR-1288-3p 0 0 1
chr16:74923926|74938266 hsa-miR-1324 0 0 1
chr16:74923926|74938266 hsa-miR-770-5p 0 0 1
chr16:74923926|74938266 hsa-miR-148a-5p 0 1 1
chr16:74923926|74938266 hsa-miR-1224-3p 0 0 1
chr16:74923926|74938266 hsa-miR-875-5p 0 0 1
chr16:74923926|74938266 hsa-miR-502-5p 0 1 1
chr16:74923926|74938266 hsa-miR-875-3p 0 0 1
chr16:74923926|74938266 hsa-miR-515-5p 0 1 1
chr16:74923926|74938266 hsa-miR-550 0 0 1
chr16:74923926|74938266 hsa-miR-378 0 0 1
chr16:74923926|74938266 hsa-miR-1269 0 0 1
chr16:74923926|74938266 hsa-miR-1254 0 0 1
chr16:74923926|74938266 hsa-miR-449a 0 1 0
chr16:74923926|74938266 hsa-miR-762 1 0 0
chr16:74923926|74938266 hsa-miR-378b 0 1 0
chr16:74923926|74938266 hsa-miR-378c 0 1 0
chr16:74923926|74938266 hsa-miR-378e 0 1 0
chr16:74923926|74938266 hsa-miR-378f 0 1 0
chr16:74923926|74938266 hsa-miR-378h 0 1 0
chr16:74923926|74938266 hsa-miR-4515 0 1 0
chr16:74923926|74938266 hsa-miR-378i 0 1 0
chr16:74923926|74938266 hsa-miR-3972 1 0 0
chr16:74923926|74938266 hsa-miR-8063 0 1 0
chr16:74923926|74938266 hsa-miR-500b-3p 0 1 0
chr16:74923926|74938266 hsa-miR-7114-5p 1 0 0
chr16:74923926|74938266 hsa-miR-6875-3p 0 1 0
chr16:74923926|74938266 hsa-miR-6849-3p 0 1 0
chr16:74923926|74938266 hsa-miR-1915-5p 0 1 0
chr16:74923926|74938266 hsa-miR-3191-5p 1 0 0
chr16:74923926|74938266 hsa-miR-3690 0 1 0
chr16:74923926|74938266 hsa-miR-3925-3p 0 1 0
chr16:74923926|74938266 hsa-miR-5000-3p 0 1 0
chr16:74923926|74938266 hsa-miR-6513-5p 0 1 0
chr16:74923926|74938266 hsa-miR-4632-3p 0 1 0
chr16:74923926|74938266 hsa-miR-6746-3p 1 1 0
chr16:74923926|74938266 hsa-miR-5089-5p 0 1 0
chr16:74923926|74938266 hsa-miR-6800-3p 0 1 0
chr16:74923926|74938266 hsa-miR-96-5p 1 0 0
chr16:74923926|74938266 hsa-miR-5001-5p 1 1 0
chr16:74923926|74938266 hsa-miR-3085-5p 1 1 0
chr16:74923926|74938266 hsa-miR-1271-3p 0 1 0
chr16:74923926|74938266 hsa-miR-378a-3p 0 1 0
chr16:74923926|74938266 hsa-miR-769-3p 1 0 0
chr16:74923926|74938266 hsa-miR-3130-5p 0 1 0
chr16:74923926|74938266 hsa-miR-1295b-5p 0 1 0
chr16:74923926|74938266 hsa-miR-449b-5p 0 1 0
chr16:74923926|74938266 hsa-miR-619-5p 1 1 0
chr16:74923926|74938266 hsa-miR-4482-5p 0 1 0
chr16:74923926|74938266 hsa-miR-378d 0 1 0
chr16:74923926|74938266 hsa-miR-1912-3p 1 1 0
chr16:74923926|74938266 hsa-miR-4712-5p 0 1 0
chr16:74923926|74938266 hsa-miR-148b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:74923926|74938266
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence VEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYT
Nucleotide Sequence GTGGAATATCTAGCCGCCCACCTCTCCAAAATCCATGGCCTGGACTGGCACCCAGACAGCGAGCACATTCTTGCTACCTCCAGTCAAGACAATTCTGTGAAGTTCTGGGATTACCGCCAGCCTCGGAAATACCTCAATATTCTTCCTTGCCAGGTGCCTGTCTGGAAGGCCAGATACACA
CircID chr16:74923926|74938266
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MARKNIEVFPRLAVIPELHRIVLTGGSKNVLAVWVPVQAMDFGEVGG
Nucleotide Sequence CTGGCAAGGAAGAATATTGAGGTATTTCCGAGGCTGGCGGTAATCCCAGAACTTCACAGAATTGTCTTGACTGGAGGTAGCAAGAATGTGCTCGCTGTCTGGGTGCCAGTCCAGGCCATGGATTTTGGAGAGGTGGGCGGCTAG
CircID chr16:74923926|74938266
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MEVARMCSLSGCQSRPWILERWAARYSTAVLG
Nucleotide Sequence CTGGAGGTAGCAAGAATGTGCTCGCTGTCTGGGTGCCAGTCCAGGCCATGGATTTTGGAGAGGTGGGCGGCTAGATATTCCACTGCTGTACTGGGT
CircID chr16:74923926|74938266
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYT
Nucleotide Sequence CTGGACTGGCACCCAGACAGCGAGCACATTCTTGCTACCTCCAGTCAAGACAATTCTGTGAAGTTCTGGGATTACCGCCAGCCTCGGAAATACCTCAATATTCTTCCTTGCCAGGTGCCTGTCTGGAAGGCCAGATACACA
CircID chr16:74923926|74938266
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MAPRQRAHSCYLQSRQFCEVLGLPPASEIPQYSSLPGACLEGQIH
Nucleotide Sequence CTGGCACCCAGACAGCGAGCACATTCTTGCTACCTCCAGTCAAGACAATTCTGTGAAGTTCTGGGATTACCGCCAGCCTCGGAAATACCTCAATATTCTTCCTTGCCAGGTGCCTGTCTGGAAGGCCAGATACAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr16:74923926|74938266 U2AF2 1 22 0
chr16:74923926|74938266 ELAVL1 3 10 0
chr16:74923926|74938266 SF3B4 1 0 0
chr16:74923926|74938266 FKBP4 0 1 0
chr16:74923926|74938266 PRPF8 0 2 1
chr16:74923926|74938266 TAF15 0 2 0
chr16:74923926|74938266 FMR1 0 0 1
chr16:74923926|74938266 NUDT21 1 0 0
chr16:74923926|74938266 CPSF3 0 1 0
chr16:74923926|74938266 FUS 1 1 0
chr16:74923926|74938266 DGCR8 0 1 1
chr16:74923926|74938266 SRSF1 0 1 2
chr16:74923926|74938266 U2AF1 0 1 0
chr16:74923926|74938266 ADAR 1 0 0
chr16:74923926|74938266 NOP56 1 0 1
chr16:74923926|74938266 SRSF9 0 0 1
chr16:74923926|74938266 DDX54 0 0 8
chr16:74923926|74938266 RBM10 0 1 0
chr16:74923926|74938266 PTBP1 0 6 0
chr16:74923926|74938266 HNRNPC 19 25 3
chr16:74923926|74938266 TRA2A 0 0 2
chr16:74923926|74938266 DHX9 2 0 1
chr16:74923926|74938266 HNRNPA1 1 4 0
chr16:74923926|74938266 FXR2 0 0 1
chr16:74923926|74938266 IGF2BP1 0 1 2
chr16:74923926|74938266 GTF2F1 0 1 0
chr16:74923926|74938266 IGF2BP2 0 2 3
chr16:74923926|74938266 TARDBP 0 1 0
chr16:74923926|74938266 BUD13 0 1 3
chr16:74923926|74938266 EIF4G2 0 0 1
chr16:74923926|74938266 CSTF2T 0 0 2
chr16:74923926|74938266 SRRM4 1 0 0
chr16:74923926|74938266 TIA1 0 2 0
chr16:74923926|74938266 FBL 0 1 0
chr16:74923926|74938266 EIF4A3 1 6 3
chr16:74923926|74938266 AGO2 1 1 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab