CircRNA Information

General Information
circRNA Basic Information
CircID chr16:87412834|87413076
Strand +
CircType exon
Host Gene ENSG00000140948.10;
Algorism CIRI2;
Sequence AGCGCTGAGGAGAATGACAGACGTAAGGGCACGTGCGCGGCGCTGGCTCGACCTGGCCCAGCTGTGGAATGGCACTGACCACTCTTGTTTCCCTCTCTAGGTGTGGAGATTCACTTGGAGAGCTCTGACAAGGAGAAGCCGGTGATGCTGCTGAATCACTTCACTTCCAGTTCCGCCAGACCCACGGCCCAGGTTCTCCCTGTGCAGAATGAGGCCAGCTCCAATCCATCAGGCCACCACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:87412834|87413076 hsa-miR-15a-5p 0 0 1
chr16:87412834|87413076 hsa-miR-15a-3p 0 0 1
chr16:87412834|87413076 hsa-miR-107 0 0 1
chr16:87412834|87413076 hsa-miR-148a-5p 0 0 1
chr16:87412834|87413076 hsa-miR-148a-3p 0 0 1
chr16:87412834|87413076 hsa-miR-214-5p 0 0 1
chr16:87412834|87413076 hsa-miR-214-3p 0 0 1
chr16:87412834|87413076 hsa-miR-15b-5p 0 0 1
chr16:87412834|87413076 hsa-miR-15b-3p 0 0 1
chr16:87412834|87413076 hsa-miR-152-5p 0 0 1
chr16:87412834|87413076 hsa-miR-152-3p 0 0 1
chr16:87412834|87413076 hsa-miR-195-5p 0 0 1
chr16:87412834|87413076 hsa-miR-195-3p 0 0 1
chr16:87412834|87413076 hsa-miR-148b-5p 0 0 1
chr16:87412834|87413076 hsa-miR-148b-3p 0 0 1
chr16:87412834|87413076 hsa-miR-424-5p 0 0 1
chr16:87412834|87413076 hsa-miR-424-3p 0 0 1
chr16:87412834|87413076 hsa-miR-497-5p 0 0 1
chr16:87412834|87413076 hsa-miR-497-3p 0 0 1
chr16:87412834|87413076 hsa-miR-573 0 0 1
chr16:87412834|87413076 hsa-miR-589-5p 0 0 1
chr16:87412834|87413076 hsa-miR-589-3p 0 0 1
chr16:87412834|87413076 hsa-miR-608 0 1 1
chr16:87412834|87413076 hsa-miR-616-5p 0 0 1
chr16:87412834|87413076 hsa-miR-616-3p 0 0 1
chr16:87412834|87413076 hsa-miR-922 0 0 1
chr16:87412834|87413076 hsa-miR-938 0 0 1
chr16:87412834|87413076 hsa-miR-1228-5p 0 0 1
chr16:87412834|87413076 hsa-miR-1228-3p 0 0 1
chr16:87412834|87413076 hsa-miR-1293 1 1 1
chr16:87412834|87413076 hsa-miR-1246 0 0 1
chr16:87412834|87413076 hsa-miR-193a-5p 0 0 1
chr16:87412834|87413076 hsa-miR-490-3p 0 0 1
chr16:87412834|87413076 hsa-miR-1207-3p 0 0 1
chr16:87412834|87413076 hsa-miR-515-5p 0 0 1
chr16:87412834|87413076 hsa-miR-103 0 0 1
chr16:87412834|87413076 hsa-miR-16 0 0 1
chr16:87412834|87413076 hsa-miR-220c 0 0 1
chr16:87412834|87413076 hsa-miR-544 0 0 1
chr16:87412834|87413076 hsa-miR-1201 0 0 1
chr16:87412834|87413076 hsa-miR-557 1 1 0
chr16:87412834|87413076 hsa-miR-762 1 0 0
chr16:87412834|87413076 hsa-miR-760 1 0 0
chr16:87412834|87413076 hsa-miR-933 1 0 0
chr16:87412834|87413076 hsa-miR-2861 1 0 0
chr16:87412834|87413076 hsa-miR-1268b 1 0 0
chr16:87412834|87413076 hsa-miR-4440 1 0 0
chr16:87412834|87413076 hsa-miR-4507 1 1 0
chr16:87412834|87413076 hsa-miR-4534 1 0 0
chr16:87412834|87413076 hsa-miR-1587 1 0 0
chr16:87412834|87413076 hsa-miR-4656 1 0 0
chr16:87412834|87413076 hsa-miR-4739 0 1 0
chr16:87412834|87413076 hsa-miR-4741 1 0 0
chr16:87412834|87413076 hsa-miR-5695 0 1 0
chr16:87412834|87413076 hsa-miR-6085 1 0 0
chr16:87412834|87413076 hsa-miR-6745 1 0 0
chr16:87412834|87413076 hsa-miR-8062 0 1 0
chr16:87412834|87413076 hsa-miR-9899 1 0 0
chr16:87412834|87413076 hsa-miR-135a-3p 1 0 0
chr16:87412834|87413076 hsa-miR-370-3p 1 0 0
chr16:87412834|87413076 hsa-miR-323a-5p 1 0 0
chr16:87412834|87413076 hsa-miR-215-3p 0 1 0
chr16:87412834|87413076 hsa-miR-6799-5p 1 0 0
chr16:87412834|87413076 hsa-miR-8071 1 0 0
chr16:87412834|87413076 hsa-miR-6873-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6748-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6793-5p 1 0 0
chr16:87412834|87413076 hsa-miR-185-3p 1 1 0
chr16:87412834|87413076 hsa-miR-4697-3p 0 1 0
chr16:87412834|87413076 hsa-miR-6760-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6514-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6874-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6858-3p 0 1 0
chr16:87412834|87413076 hsa-miR-6815-3p 0 1 0
chr16:87412834|87413076 hsa-miR-3944-3p 1 0 0
chr16:87412834|87413076 hsa-miR-1229-5p 1 0 0
chr16:87412834|87413076 hsa-miR-4640-5p 1 1 0
chr16:87412834|87413076 hsa-miR-3677-3p 1 0 0
chr16:87412834|87413076 hsa-miR-6878-3p 0 1 0
chr16:87412834|87413076 hsa-miR-4743-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6781-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6877-5p 1 0 0
chr16:87412834|87413076 hsa-miR-5584-5p 0 1 0
chr16:87412834|87413076 hsa-miR-4778-3p 0 1 0
chr16:87412834|87413076 hsa-miR-7112-3p 0 1 0
chr16:87412834|87413076 hsa-miR-4750-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6869-3p 0 1 0
chr16:87412834|87413076 hsa-miR-6758-3p 0 1 0
chr16:87412834|87413076 hsa-miR-4778-5p 0 1 0
chr16:87412834|87413076 hsa-miR-1207-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6726-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6754-5p 1 1 0
chr16:87412834|87413076 hsa-miR-6756-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6769a-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6803-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6842-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6851-5p 1 0 0
chr16:87412834|87413076 hsa-miR-1249-5p 1 0 0
chr16:87412834|87413076 hsa-miR-3620-5p 1 0 0
chr16:87412834|87413076 hsa-miR-4726-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6848-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6889-5p 1 0 0
chr16:87412834|87413076 hsa-miR-3085-5p 1 1 0
chr16:87412834|87413076 hsa-miR-3940-5p 1 1 0
chr16:87412834|87413076 hsa-miR-6758-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6856-5p 0 1 0
chr16:87412834|87413076 hsa-miR-6766-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6724-5p 1 0 0
chr16:87412834|87413076 hsa-miR-6753-3p 1 0 0
chr16:87412834|87413076 hsa-miR-6718-5p 0 1 0
chr16:87412834|87413076 hsa-miR-203b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:87412834|87413076
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MFPSLGVEIHLESSDKEKPVMLLNHFTSSSARPTAQVLPVQNEASSNPSGHHP
Nucleotide Sequence TTGTTTCCCTCTCTAGGTGTGGAGATTCACTTGGAGAGCTCTGACAAGGAGAAGCCGGTGATGCTGCTGAATCACTTCACTTCCAGTTCCGCCAGACCCACGGCCCAGGTTCTCCCTGTGCAGAATGAGGCCAGCTCCAATCCATCAGGCCACCACCCC
CircID chr16:87412834|87413076
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MRRMTDVRARARRWLDLAQLWNGTDHSCFPL
Nucleotide Sequence CTGAGGAGAATGACAGACGTAAGGGCACGTGCGCGGCGCTGGCTCGACCTGGCCCAGCTGTGGAATGGCACTGACCACTCTTGTTTCCCTCTCTAG
CircID chr16:87412834|87413076
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MHRENLGRGSGGTGSEVIQQHHRLLLVRALQVNLHT
Nucleotide Sequence CTGCACAGGGAGAACCTGGGCCGTGGGTCTGGCGGAACTGGAAGTGAAGTGATTCAGCAGCATCACCGGCTTCTCCTTGTCAGAGCTCTCCAAGTGAATCTCCACACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab