CircRNA Information

General Information
circRNA Basic Information
CircID chr16:87702408|87702772
Strand -
CircType exon
Host Gene ENSG00000104731.12;
Algorism CIRI2;
Sequence CCCCAGCCTGGGAACCCCCGGCTTTCTCGCTTGGGCCTCTGGGGAGCCCGCGTCCCCAAATGTAGCCACATCAGAGCACACTTCTCCGGCAGCAACTTCCCAGGCATGTCCGTGGCCTCCTCGGGGGCAGGCGCCCCCTCCTGGACGCTGAGCTGACCTCTCTAGCAGGACTCTGCTCATCTGCACCATTTGCCATTTCCACAGAAACCCTGTCCCCAGAGCCCGGCGGAGAAAAAAACCACAGGGGCCTCTCTGCTCAGGGGAGCCACGCGGAAGAGGCACCCTCGCTCCAGCTGCCAAAGCAACTGAGCCTGCTGCAAACATCTCTGTGAACTCGGACAGGAAACAGTGTTAACCTGTGTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:87702408|87702772 hsa-miR-27a-5p 0 0 1
chr16:87702408|87702772 hsa-miR-27a-3p 0 0 1
chr16:87702408|87702772 hsa-miR-96-5p 0 0 1
chr16:87702408|87702772 hsa-miR-96-3p 0 0 1
chr16:87702408|87702772 hsa-miR-107 0 0 1
chr16:87702408|87702772 hsa-miR-182-5p 0 0 1
chr16:87702408|87702772 hsa-miR-182-3p 0 0 1
chr16:87702408|87702772 hsa-miR-214-5p 0 0 1
chr16:87702408|87702772 hsa-miR-214-3p 0 0 1
chr16:87702408|87702772 hsa-miR-221-5p 0 0 1
chr16:87702408|87702772 hsa-miR-221-3p 0 0 1
chr16:87702408|87702772 hsa-miR-222-5p 0 0 1
chr16:87702408|87702772 hsa-miR-222-3p 0 0 1
chr16:87702408|87702772 hsa-miR-27b-5p 0 0 1
chr16:87702408|87702772 hsa-miR-27b-3p 0 0 1
chr16:87702408|87702772 hsa-miR-141-5p 0 0 1
chr16:87702408|87702772 hsa-miR-141-3p 0 0 1
chr16:87702408|87702772 hsa-miR-200a-5p 0 0 1
chr16:87702408|87702772 hsa-miR-200a-3p 0 0 1
chr16:87702408|87702772 hsa-miR-370-5p 0 0 1
chr16:87702408|87702772 hsa-miR-370-3p 0 0 1
chr16:87702408|87702772 hsa-miR-326 0 0 1
chr16:87702408|87702772 hsa-miR-452-5p 0 0 1
chr16:87702408|87702772 hsa-miR-452-3p 0 0 1
chr16:87702408|87702772 hsa-miR-484 0 1 1
chr16:87702408|87702772 hsa-miR-522-5p 0 0 1
chr16:87702408|87702772 hsa-miR-522-3p 0 0 1
chr16:87702408|87702772 hsa-miR-595 1 1 1
chr16:87702408|87702772 hsa-miR-637 1 1 1
chr16:87702408|87702772 hsa-miR-648 0 0 1
chr16:87702408|87702772 hsa-miR-661 1 0 1
chr16:87702408|87702772 hsa-miR-1271-5p 0 0 1
chr16:87702408|87702772 hsa-miR-1271-3p 0 0 1
chr16:87702408|87702772 hsa-miR-1301-5p 0 0 1
chr16:87702408|87702772 hsa-miR-1301-3p 0 0 1
chr16:87702408|87702772 hsa-miR-665 0 0 1
chr16:87702408|87702772 hsa-miR-760 1 1 1
chr16:87702408|87702772 hsa-miR-937-5p 0 0 1
chr16:87702408|87702772 hsa-miR-937-3p 0 0 1
chr16:87702408|87702772 hsa-miR-1236-5p 0 0 1
chr16:87702408|87702772 hsa-miR-1236-3p 0 0 1
chr16:87702408|87702772 hsa-miR-1208 0 0 1
chr16:87702408|87702772 hsa-miR-885-3p 0 0 1
chr16:87702408|87702772 hsa-miR-566 0 0 1
chr16:87702408|87702772 hsa-miR-1207-3p 0 0 1
chr16:87702408|87702772 hsa-miR-331-3p 0 0 1
chr16:87702408|87702772 hsa-miR-513a-5p 0 0 1
chr16:87702408|87702772 hsa-miR-324-3p 0 0 1
chr16:87702408|87702772 hsa-miR-125a-5p 0 0 1
chr16:87702408|87702772 hsa-miR-330-5p 0 0 1
chr16:87702408|87702772 hsa-miR-151-5p 0 0 1
chr16:87702408|87702772 hsa-miR-125b 0 0 1
chr16:87702408|87702772 hsa-miR-103 0 0 1
chr16:87702408|87702772 hsa-miR-1254 0 0 1
chr16:87702408|87702772 hsa-miR-24 0 0 1
chr16:87702408|87702772 hsa-miR-147a 1 0 0
chr16:87702408|87702772 hsa-miR-151b 0 1 0
chr16:87702408|87702772 hsa-miR-1913 0 1 0
chr16:87702408|87702772 hsa-miR-3197 1 0 0
chr16:87702408|87702772 hsa-miR-4298 1 0 0
chr16:87702408|87702772 hsa-miR-4319 0 1 0
chr16:87702408|87702772 hsa-miR-3135b 1 1 0
chr16:87702408|87702772 hsa-miR-4462 1 0 0
chr16:87702408|87702772 hsa-miR-4488 1 1 0
chr16:87702408|87702772 hsa-miR-4505 1 0 0
chr16:87702408|87702772 hsa-miR-4648 1 0 0
chr16:87702408|87702772 hsa-miR-4657 1 0 0
chr16:87702408|87702772 hsa-miR-4739 1 0 0
chr16:87702408|87702772 hsa-miR-4741 1 0 0
chr16:87702408|87702772 hsa-miR-4767 1 0 0
chr16:87702408|87702772 hsa-miR-5090 1 0 0
chr16:87702408|87702772 hsa-miR-5572 1 0 0
chr16:87702408|87702772 hsa-miR-8089 1 1 0
chr16:87702408|87702772 hsa-miR-9899 1 1 0
chr16:87702408|87702772 hsa-miR-12115 1 0 0
chr16:87702408|87702772 hsa-miR-12127 0 1 0
chr16:87702408|87702772 hsa-miR-4747-3p 1 0 0
chr16:87702408|87702772 hsa-miR-6857-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6854-5p 0 1 0
chr16:87702408|87702772 hsa-miR-3692-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6833-5p 1 1 0
chr16:87702408|87702772 hsa-miR-7851-3p 1 0 0
chr16:87702408|87702772 hsa-miR-7114-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6089 1 0 0
chr16:87702408|87702772 hsa-miR-1225-3p 1 0 0
chr16:87702408|87702772 hsa-miR-3192-5p 1 1 0
chr16:87702408|87702772 hsa-miR-4695-5p 1 1 0
chr16:87702408|87702772 hsa-miR-4755-3p 1 0 0
chr16:87702408|87702772 hsa-miR-24-3p 0 1 0
chr16:87702408|87702772 hsa-miR-6820-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6727-5p 1 0 0
chr16:87702408|87702772 hsa-miR-3187-3p 1 0 0
chr16:87702408|87702772 hsa-miR-6721-5p 1 0 0
chr16:87702408|87702772 hsa-miR-23b-5p 0 1 0
chr16:87702408|87702772 hsa-miR-7845-5p 1 0 0
chr16:87702408|87702772 hsa-miR-503-5p 1 0 0
chr16:87702408|87702772 hsa-miR-3180-3p 1 0 0
chr16:87702408|87702772 hsa-miR-877-3p 0 1 0
chr16:87702408|87702772 hsa-miR-3190-3p 1 0 0
chr16:87702408|87702772 hsa-miR-6805-5p 0 1 0
chr16:87702408|87702772 hsa-miR-2467-5p 0 1 0
chr16:87702408|87702772 hsa-miR-23a-5p 0 1 0
chr16:87702408|87702772 hsa-miR-486-3p 1 0 0
chr16:87702408|87702772 hsa-miR-6810-5p 1 1 0
chr16:87702408|87702772 hsa-miR-5008-5p 1 1 0
chr16:87702408|87702772 hsa-miR-5088-5p 1 0 0
chr16:87702408|87702772 hsa-miR-4640-5p 1 0 0
chr16:87702408|87702772 hsa-miR-296-3p 1 0 0
chr16:87702408|87702772 hsa-miR-92b-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6749-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6501-5p 1 0 0
chr16:87702408|87702772 hsa-miR-299-3p 1 0 0
chr16:87702408|87702772 hsa-miR-6789-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6877-5p 1 0 0
chr16:87702408|87702772 hsa-miR-664b-5p 1 0 0
chr16:87702408|87702772 hsa-miR-3191-3p 0 1 0
chr16:87702408|87702772 hsa-miR-7152-5p 0 1 0
chr16:87702408|87702772 hsa-miR-10400-5p 1 0 0
chr16:87702408|87702772 hsa-miR-1207-5p 1 0 0
chr16:87702408|87702772 hsa-miR-4763-3p 1 0 0
chr16:87702408|87702772 hsa-miR-1343-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6743-5p 1 0 0
chr16:87702408|87702772 hsa-miR-10401-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6763-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6774-5p 0 1 0
chr16:87702408|87702772 hsa-miR-6779-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6780a-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6879-5p 1 0 0
chr16:87702408|87702772 hsa-miR-892c-3p 1 1 0
chr16:87702408|87702772 hsa-miR-5189-5p 1 0 0
chr16:87702408|87702772 hsa-miR-10396a-5p 1 0 0
chr16:87702408|87702772 hsa-miR-1237-5p 1 0 0
chr16:87702408|87702772 hsa-miR-328-5p 1 0 0
chr16:87702408|87702772 hsa-miR-4649-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6738-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6846-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6848-5p 1 0 0
chr16:87702408|87702772 hsa-miR-4697-5p 0 1 0
chr16:87702408|87702772 hsa-miR-6845-5p 1 0 0
chr16:87702408|87702772 hsa-miR-939-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6758-5p 0 1 0
chr16:87702408|87702772 hsa-miR-6856-5p 0 1 0
chr16:87702408|87702772 hsa-miR-4664-5p 0 1 0
chr16:87702408|87702772 hsa-miR-1914-3p 1 0 0
chr16:87702408|87702772 hsa-miR-4665-5p 1 0 0
chr16:87702408|87702772 hsa-miR-4700-5p 1 1 0
chr16:87702408|87702772 hsa-miR-4646-5p 1 1 0
chr16:87702408|87702772 hsa-miR-4667-5p 1 1 0
chr16:87702408|87702772 hsa-miR-10398-5p 0 1 0
chr16:87702408|87702772 hsa-miR-2682-3p 0 1 0
chr16:87702408|87702772 hsa-miR-550a-5p 1 0 0
chr16:87702408|87702772 hsa-miR-6762-5p 1 1 0
chr16:87702408|87702772 hsa-miR-6805-3p 1 0 0
chr16:87702408|87702772 hsa-miR-3619-5p 1 1 0
chr16:87702408|87702772 hsa-miR-6781-3p 0 1 0
chr16:87702408|87702772 hsa-miR-151a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:87702408|87702772
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MGLWGARVPKCSHIRAHFSGSNFPGMSVASSGAGAPSWTLS
Nucleotide Sequence TTGGGCCTCTGGGGAGCCCGCGTCCCCAAATGTAGCCACATCAGAGCACACTTCTCCGGCAGCAACTTCCCAGGCATGTCCGTGGCCTCCTCGGGGGCAGGCGCCCCCTCCTGGACGCTGAGCTGA
CircID chr16:87702408|87702772
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MHHLPFPQKPCPQSPAEKKTTGASLLRGATRKRHPRSSCQSN
Nucleotide Sequence CTGCACCATTTGCCATTTCCACAGAAACCCTGTCCCCAGAGCCCGGCGGAGAAAAAAACCACAGGGGCCTCTCTGCTCAGGGGAGCCACGCGGAAGAGGCACCCTCGCTCCAGCTGCCAAAGCAACTGA
CircID chr16:87702408|87702772
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MGTPGFLAWASGEPASPNVATSEHTSPAATSQACPWPPRGQAPPPGR
Nucleotide Sequence CTGGGAACCCCCGGCTTTCTCGCTTGGGCCTCTGGGGAGCCCGCGTCCCCAAATGTAGCCACATCAGAGCACACTTCTCCGGCAGCAACTTCCCAGGCATGTCCGTGGCCTCCTCGGGGGCAGGCGCCCCCTCCTGGACGCTGA
CircID chr16:87702408|87702772
ORF Type ORF4
Protein Length 60
Nucleotide Length 183
Protein Sequence MLICTICHFHRNPVPRARRRKKPQGPLCSGEPRGRGTLAPAAKATEPAANISVNSDRKQC
Nucleotide Sequence CTGCTCATCTGCACCATTTGCCATTTCCACAGAAACCCTGTCCCCAGAGCCCGGCGGAGAAAAAAACCACAGGGGCCTCTCTGCTCAGGGGAGCCACGCGGAAGAGGCACCCTCGCTCCAGCTGCCAAAGCAACTGAGCCTGCTGCAAACATCTCTGTGAACTCGGACAGGAAACAGTGTTAA
CircID chr16:87702408|87702772
ORF Type ORF5
Protein Length 63
Nucleotide Length 192
Protein Sequence MDAELTSLAGLCSSAPFAISTETLSPEPGGEKNHRGLSAQGSHAEEAPSLQLPKQLSLLQTSL
Nucleotide Sequence CTGGACGCTGAGCTGACCTCTCTAGCAGGACTCTGCTCATCTGCACCATTTGCCATTTCCACAGAAACCCTGTCCCCAGAGCCCGGCGGAGAAAAAAACCACAGGGGCCTCTCTGCTCAGGGGAGCCACGCGGAAGAGGCACCCTCGCTCCAGCTGCCAAAGCAACTGAGCCTGCTGCAAACATCTCTGTGA
CircID chr16:87702408|87702772
ORF Type ORF6
Protein Length 47
Nucleotide Length 144
Protein Sequence MQQAQLLWQLERGCLFRVAPLSREAPVVFFSAGLWGQGFCGNGKWCR
Nucleotide Sequence TTGCAGCAGGCTCAGTTGCTTTGGCAGCTGGAGCGAGGGTGCCTCTTCCGCGTGGCTCCCCTGAGCAGAGAGGCCCCTGTGGTTTTTTTCTCCGCCGGGCTCTGGGGACAGGGTTTCTGTGGAAATGGCAAATGGTGCAGATGA
CircID chr16:87702408|87702772
ORF Type ORF7
Protein Length 35
Nucleotide Length 105
Protein Sequence MPGKLLPEKCALMWLHLGTRAPQRPKRESRGFPGW
Nucleotide Sequence ATGCCTGGGAAGTTGCTGCCGGAGAAGTGTGCTCTGATGTGGCTACATTTGGGGACGCGGGCTCCCCAGAGGCCCAAGCGAGAAAGCCGGGGGTTCCCAGGCTGG
CircID chr16:87702408|87702772
ORF Type ORF8
Protein Length 30
Nucleotide Length 93
Protein Sequence MFPVRVHRDVCSRLSCFGSWSEGASSAWLP
Nucleotide Sequence CTGTTTCCTGTCCGAGTTCACAGAGATGTTTGCAGCAGGCTCAGTTGCTTTGGCAGCTGGAGCGAGGGTGCCTCTTCCGCGTGGCTCCCCTGA
CircID chr16:87702408|87702772
ORF Type ORF9
Protein Length 57
Nucleotide Length 174
Protein Sequence MWFFSPPGSGDRVSVEMANGADEQSPAREVSSASRRGRLPPRRPRTCLGSCCRRSVL
Nucleotide Sequence CTGTGGTTTTTTTCTCCGCCGGGCTCTGGGGACAGGGTTTCTGTGGAAATGGCAAATGGTGCAGATGAGCAGAGTCCTGCTAGAGAGGTCAGCTCAGCGTCCAGGAGGGGGCGCCTGCCCCCGAGGAGGCCACGGACATGCCTGGGAAGTTGCTGCCGGAGAAGTGTGCTCTGA
CircID chr16:87702408|87702772
ORF Type ORF10
Protein Length 114
Nucleotide Length 342
Protein Sequence MSEFTEMFAAGSVALAAGARVPLPRGSPEQRGPCGFFLRRALGTGFLWKWQMVQMSRVLLERSAQRPGGGACPRGGHGHAWEVAAGEVCSDVATFGDAGSPEAQARKPGVPRLG
Nucleotide Sequence CTGTCCGAGTTCACAGAGATGTTTGCAGCAGGCTCAGTTGCTTTGGCAGCTGGAGCGAGGGTGCCTCTTCCGCGTGGCTCCCCTGAGCAGAGAGGCCCCTGTGGTTTTTTTCTCCGCCGGGCTCTGGGGACAGGGTTTCTGTGGAAATGGCAAATGGTGCAGATGAGCAGAGTCCTGCTAGAGAGGTCAGCTCAGCGTCCAGGAGGGGGCGCCTGCCCCCGAGGAGGCCACGGACATGCCTGGGAAGTTGCTGCCGGAGAAGTGTGCTCTGATGTGGCTACATTTGGGGACGCGGGCTCCCCAGAGGCCCAAGCGAGAAAGCCGGGGGTTCCCAGGCTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab