CircRNA Information

General Information
circRNA Basic Information
CircID chr16:87710649|87710819
Strand -
CircType exon
Host Gene ENSG00000104731.12;
Algorism CIRI2;
Sequence CCGCGTGTTTTTCCAATTTCCAGCCCAGGTGCCACCACACGTCAAAAGCAGCTTCAGGAGTTTGCAACCAACAGCGACCAGCCCTCCTTGGCCCTTTCTGGGTCCGGCTGACCTGGTACACTCAGAGACCCTGAGGCCAACTGGGGGATCCCCTTCTGGGACTGTCACCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:87710649|87710819 hsa-miR-527 0 0 1
chr16:87710649|87710819 hsa-miR-593-5p 0 0 1
chr16:87710649|87710819 hsa-miR-593-3p 0 0 1
chr16:87710649|87710819 hsa-miR-1182 0 0 1
chr16:87710649|87710819 hsa-miR-1262 0 1 1
chr16:87710649|87710819 hsa-miR-1266-5p 0 0 1
chr16:87710649|87710819 hsa-miR-1266-3p 0 0 1
chr16:87710649|87710819 hsa-miR-127-5p 0 0 1
chr16:87710649|87710819 hsa-miR-574-5p 0 0 1
chr16:87710649|87710819 hsa-miR-361-3p 0 1 1
chr16:87710649|87710819 hsa-miR-875-3p 0 0 1
chr16:87710649|87710819 hsa-miR-518a-5p 0 0 1
chr16:87710649|87710819 hsa-miR-542-3p 0 0 1
chr16:87710649|87710819 hsa-miR-608 1 0 0
chr16:87710649|87710819 hsa-miR-639 1 0 0
chr16:87710649|87710819 hsa-miR-658 1 0 0
chr16:87710649|87710819 hsa-miR-762 1 1 0
chr16:87710649|87710819 hsa-miR-1270 1 1 0
chr16:87710649|87710819 hsa-miR-711 0 1 0
chr16:87710649|87710819 hsa-miR-2861 1 0 0
chr16:87710649|87710819 hsa-miR-544b 1 0 0
chr16:87710649|87710819 hsa-miR-3154 0 1 0
chr16:87710649|87710819 hsa-miR-3652 1 1 0
chr16:87710649|87710819 hsa-miR-3921 0 1 0
chr16:87710649|87710819 hsa-miR-378g 0 1 0
chr16:87710649|87710819 hsa-miR-4430 1 0 0
chr16:87710649|87710819 hsa-miR-3135b 1 0 0
chr16:87710649|87710819 hsa-miR-4492 1 1 0
chr16:87710649|87710819 hsa-miR-4498 1 1 0
chr16:87710649|87710819 hsa-miR-4505 1 0 0
chr16:87710649|87710819 hsa-miR-4508 1 0 0
chr16:87710649|87710819 hsa-miR-4518 0 1 0
chr16:87710649|87710819 hsa-miR-1587 1 1 0
chr16:87710649|87710819 hsa-miR-4654 1 0 0
chr16:87710649|87710819 hsa-miR-4656 1 0 0
chr16:87710649|87710819 hsa-miR-4674 1 0 0
chr16:87710649|87710819 hsa-miR-4741 1 0 0
chr16:87710649|87710819 hsa-miR-5787 1 0 0
chr16:87710649|87710819 hsa-miR-323a-5p 1 0 0
chr16:87710649|87710819 hsa-miR-7851-3p 1 1 0
chr16:87710649|87710819 hsa-miR-6842-3p 1 0 0
chr16:87710649|87710819 hsa-miR-6742-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6765-3p 0 1 0
chr16:87710649|87710819 hsa-miR-6821-5p 1 0 0
chr16:87710649|87710819 hsa-miR-1229-5p 1 0 0
chr16:87710649|87710819 hsa-miR-4640-5p 1 1 0
chr16:87710649|87710819 hsa-miR-296-3p 1 0 0
chr16:87710649|87710819 hsa-miR-6823-5p 1 0 0
chr16:87710649|87710819 hsa-miR-4713-3p 0 1 0
chr16:87710649|87710819 hsa-miR-4446-3p 1 0 0
chr16:87710649|87710819 hsa-miR-149-3p 1 0 0
chr16:87710649|87710819 hsa-miR-4715-5p 0 1 0
chr16:87710649|87710819 hsa-miR-6781-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6877-5p 1 0 0
chr16:87710649|87710819 hsa-miR-500a-3p 1 0 0
chr16:87710649|87710819 hsa-miR-652-3p 1 0 0
chr16:87710649|87710819 hsa-miR-1207-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6865-5p 1 0 0
chr16:87710649|87710819 hsa-miR-5001-5p 1 1 0
chr16:87710649|87710819 hsa-miR-6754-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6813-5p 1 0 0
chr16:87710649|87710819 hsa-miR-10401-5p 1 0 0
chr16:87710649|87710819 hsa-miR-3620-5p 1 0 0
chr16:87710649|87710819 hsa-miR-1237-5p 1 0 0
chr16:87710649|87710819 hsa-miR-328-5p 1 0 0
chr16:87710649|87710819 hsa-miR-4649-5p 1 0 0
chr16:87710649|87710819 hsa-miR-4685-5p 1 0 0
chr16:87710649|87710819 hsa-miR-4726-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6729-5p 1 0 0
chr16:87710649|87710819 hsa-miR-3940-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6785-5p 1 0 0
chr16:87710649|87710819 hsa-miR-6843-3p 0 1 0
chr16:87710649|87710819 hsa-miR-1271-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:87710649|87710819
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MQPTATSPPWPFLGPADLVHSETLRPTGGSPSGTVT
Nucleotide Sequence TTGCAACCAACAGCGACCAGCCCTCCTTGGCCCTTTCTGGGTCCGGCTGACCTGGTACACTCAGAGACCCTGAGGCCAACTGGGGGATCCCCTTCTGGGACTGTCACC
CircID chr16:87710649|87710819
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MVAVGCKLLKLLLTCGGTWAGNWKNTR
Nucleotide Sequence CTGGTCGCTGTTGGTTGCAAACTCCTGAAGCTGCTTTTGACGTGTGGTGGCACCTGGGCTGGAAATTGGAAAAACACGCGG
CircID chr16:87710649|87710819
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MASGSLSVPGQPDPERAKEGWSLLVANS
Nucleotide Sequence TTGGCCTCAGGGTCTCTGAGTGTACCAGGTCAGCCGGACCCAGAAAGGGCCAAGGAGGGCTGGTCGCTGTTGGTTGCAAACTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab