CircRNA Information

General Information
circRNA Basic Information
CircID chr16:88495651|88495814
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence GCCTCCTGGTGAAGGGAACCCCACCACCCTGGCCCCCAAGTGGGCTCCTGGCCACTCACCTTCCATCCGGGGCCATAGAGCCCCGGCTTCCCTCATGTTACTTCACACACACAGAGTGGTGGGCAAGTCCTGTGGGCCTCTGAGGCCGCCTCCTCACTCCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:88495651|88495814 hsa-miR-197-5p 0 0 1
chr16:88495651|88495814 hsa-miR-197-3p 0 0 1
chr16:88495651|88495814 hsa-miR-204-5p 0 0 1
chr16:88495651|88495814 hsa-miR-204-3p 0 0 1
chr16:88495651|88495814 hsa-miR-211-5p 0 0 1
chr16:88495651|88495814 hsa-miR-211-3p 0 0 1
chr16:88495651|88495814 hsa-miR-412-5p 0 0 1
chr16:88495651|88495814 hsa-miR-412-3p 0 0 1
chr16:88495651|88495814 hsa-miR-623 0 0 1
chr16:88495651|88495814 hsa-miR-802 0 0 1
chr16:88495651|88495814 hsa-miR-541-5p 0 0 1
chr16:88495651|88495814 hsa-miR-541-3p 0 0 1
chr16:88495651|88495814 hsa-miR-665 0 1 1
chr16:88495651|88495814 hsa-miR-1226-5p 0 0 1
chr16:88495651|88495814 hsa-miR-1226-3p 0 0 1
chr16:88495651|88495814 hsa-miR-1293 0 0 1
chr16:88495651|88495814 hsa-miR-1275 0 0 1
chr16:88495651|88495814 hsa-miR-671-5p 1 0 1
chr16:88495651|88495814 hsa-miR-654-5p 0 0 1
chr16:88495651|88495814 hsa-miR-650 1 0 0
chr16:88495651|88495814 hsa-miR-2117 0 1 0
chr16:88495651|88495814 hsa-miR-3196 1 0 0
chr16:88495651|88495814 hsa-miR-4281 1 0 0
chr16:88495651|88495814 hsa-miR-3911 1 0 0
chr16:88495651|88495814 hsa-miR-4656 1 0 0
chr16:88495651|88495814 hsa-miR-4658 1 0 0
chr16:88495651|88495814 hsa-miR-4706 0 1 0
chr16:88495651|88495814 hsa-miR-4739 1 0 0
chr16:88495651|88495814 hsa-miR-6069 1 0 0
chr16:88495651|88495814 hsa-miR-6090 1 0 0
chr16:88495651|88495814 hsa-miR-8083 0 1 0
chr16:88495651|88495814 hsa-miR-12126 1 1 0
chr16:88495651|88495814 hsa-miR-4435 0 1 0
chr16:88495651|88495814 hsa-miR-92a-2-5p 0 1 0
chr16:88495651|88495814 hsa-miR-4700-3p 0 1 0
chr16:88495651|88495814 hsa-miR-4433a-3p 1 0 0
chr16:88495651|88495814 hsa-miR-6765-5p 1 0 0
chr16:88495651|88495814 hsa-miR-210-3p 1 0 0
chr16:88495651|88495814 hsa-miR-6894-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6822-3p 0 1 0
chr16:88495651|88495814 hsa-miR-125a-3p 1 0 0
chr16:88495651|88495814 hsa-miR-1227-5p 1 0 0
chr16:88495651|88495814 hsa-miR-7114-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6089 1 0 0
chr16:88495651|88495814 hsa-miR-6867-5p 1 1 0
chr16:88495651|88495814 hsa-miR-3677-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6727-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6759-5p 1 0 0
chr16:88495651|88495814 hsa-miR-491-5p 1 0 0
chr16:88495651|88495814 hsa-miR-3190-3p 0 1 0
chr16:88495651|88495814 hsa-miR-6805-5p 0 1 0
chr16:88495651|88495814 hsa-miR-5008-5p 0 1 0
chr16:88495651|88495814 hsa-miR-6786-5p 1 0 0
chr16:88495651|88495814 hsa-miR-4707-3p 1 0 0
chr16:88495651|88495814 hsa-miR-6784-5p 0 1 0
chr16:88495651|88495814 hsa-miR-4640-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6834-5p 0 1 0
chr16:88495651|88495814 hsa-miR-4787-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6818-5p 0 1 0
chr16:88495651|88495814 hsa-miR-302c-5p 0 1 0
chr16:88495651|88495814 hsa-miR-10400-5p 1 0 0
chr16:88495651|88495814 hsa-miR-1233-5p 1 0 0
chr16:88495651|88495814 hsa-miR-4763-3p 1 0 0
chr16:88495651|88495814 hsa-miR-6769b-5p 1 1 0
chr16:88495651|88495814 hsa-miR-1343-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6752-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6769a-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6803-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6851-5p 1 1 0
chr16:88495651|88495814 hsa-miR-10401-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6751-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6797-5p 1 0 0
chr16:88495651|88495814 hsa-miR-4755-5p 0 1 0
chr16:88495651|88495814 hsa-miR-328-5p 1 0 0
chr16:88495651|88495814 hsa-miR-4649-5p 1 0 0
chr16:88495651|88495814 hsa-miR-4726-5p 0 1 0
chr16:88495651|88495814 hsa-miR-4745-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6729-5p 1 0 0
chr16:88495651|88495814 hsa-miR-675-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6777-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6846-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6848-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6858-5p 1 1 0
chr16:88495651|88495814 hsa-miR-6889-5p 1 1 0
chr16:88495651|88495814 hsa-miR-939-5p 1 1 0
chr16:88495651|88495814 hsa-miR-1238-5p 0 1 0
chr16:88495651|88495814 hsa-miR-4758-5p 1 1 0
chr16:88495651|88495814 hsa-miR-10398-3p 1 0 0
chr16:88495651|88495814 hsa-miR-6790-5p 1 0 0
chr16:88495651|88495814 hsa-miR-6718-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:88495651|88495814
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MAPKWAPGHSPSIRGHRAPASLMLLHTHRVVGKSCGPLRPPPHSP
Nucleotide Sequence CTGGCCCCCAAGTGGGCTCCTGGCCACTCACCTTCCATCCGGGGCCATAGAGCCCCGGCTTCCCTCATGTTACTTCACACACACAGAGTGGTGGGCAAGTCCTGTGGGCCTCTGAGGCCGCCTCCTCACTCCCCG
CircID chr16:88495651|88495814
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MVKGTPPPWPPSGLLATHLPSGAIEPRLPSCYFTHTEWWASPVGL
Nucleotide Sequence CTGGTGAAGGGAACCCCACCACCCTGGCCCCCAAGTGGGCTCCTGGCCACTCACCTTCCATCCGGGGCCATAGAGCCCCGGCTTCCCTCATGTTACTTCACACACACAGAGTGGTGGGCAAGTCCTGTGGGCCTCTGA
CircID chr16:88495651|88495814
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MREAGALWPRMEGEWPGAHLGARVVGFPSPGG
Nucleotide Sequence ATGAGGGAAGCCGGGGCTCTATGGCCCCGGATGGAAGGTGAGTGGCCAGGAGCCCACTTGGGGGCCAGGGTGGTGGGGTTCCCTTCACCAGGAGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab